G211349


Basic Information

Item Value
gene id G211349
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15000945 ~ 15001328 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250397
GTACCTTGATTATCATCATCCATGCTTGCTGCTAAATGAGACGGTGAGATAGCAAAAAACGGATAAATACAACGTTCCGAGCCAGATGGCTGTTGCAGTGTCGCTTTTTACGTTGAAGGCTGCATTTACAGGCGACTCGCatcacccgcacacacacacacacacacacgcacgtctGGTCTCGTGTGAGACTCGGACCAAAAATGAGTGTTCAGTGTGCTCGCGAGACAGTCTTCTTCCTGTCCGGTGTGAATGGATGAAAAACCTCTTGGTCCACTTTTTCACTGGTGCTGCTTTTAAATCATTCGGTGGAGTGATGCTCCCTCTCCTTCCTGCCCACCGACACTGACATCTGGTTTTCACG

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU250397 True 364 lncRNA 0.49 2 15000945 15001328

Neighbor

gene id symbol gene type direction distance location
LOC113528182 LOC108274645,LOC108274429 coding downstream 28361 14955058 ~ 14972584 (-)
LOC113528557 LOC108260380 coding downstream 53411 14941903 ~ 14947534 (-)
amn amn coding downstream 66784 14931916 ~ 14934161 (-)
otop2 otop2 coding downstream 91550 14900833 ~ 14909395 (-)
LOC113527964 LOC108260935 coding downstream 122822 14875335 ~ 14878123 (-)
cacng5b cacng5b,LOC108275568,LOC108437158,LOC107729207,LOC107556612,LOC107664435,LOC107698772 coding upstream 37042 15038370 ~ 15051643 (-)
si:ch73-374l24.1 si:ch73-374l24.1,LOC108259727,LOC108437159,LOC102304961,LOC107556610,LOC102791879 coding upstream 52216 15053544 ~ 15203184 (-)
LOC113528654 NA coding upstream 470449 15471777 ~ 15471912 (-)
LOC113528505 LOC108277132 coding upstream 577126 15578454 ~ 15581065 (-)
LOC113528397 stk31 coding upstream 581276 15582604 ~ 15595204 (-)
G211346 NA non-coding downstream 65824 14934669 ~ 14935121 (-)
G211274 NA non-coding downstream 153489 14847252 ~ 14847456 (-)
G211269 NA non-coding downstream 156633 14827235 ~ 14844312 (-)
G211195 socs3 non-coding downstream 379163 14619232 ~ 14621782 (-)
G211187 NA non-coding downstream 406281 14588820 ~ 14594664 (-)
G211363 NA non-coding upstream 33841 15035169 ~ 15036895 (-)
G211688 NA non-coding upstream 343181 15344509 ~ 15344731 (-)
G211737 NA non-coding upstream 470444 15471772 ~ 15473343 (-)
LOC113528255 NA non-coding upstream 470616 15471944 ~ 15472817 (-)
G211751 NA non-coding upstream 508369 15509697 ~ 15510283 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 14833 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 310813 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 479970 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 971304 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 994433 14004169 ~ 14006512 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1149747 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 1571217 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 1759904 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 2291445 17292773 ~ 17319719 (-)
G212700 NA other upstream 2384883 17386211 ~ 17425901 (-)

Expression


Co-expression Network