G211800 (rnf213)


Basic Information

Item Value
gene id G211800
gene name rnf213
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15623707 ~ 15624357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250892
TTTTCAAGCATGAAAATGACTCTTGGATGTTCGTCCAGAAGGGGAGAAACTCATCTTTAGGCAGATTTGGCAGGCAGAGGGCAGAGCAAAGACAATTAAGTTCCCTCCGTTCCAGCTTAAGGTCATACTGCTTCCACAAGTACAGCATAATGATAGCAGCCTTCAGAGGATCCTTAAtgtattcacttttttttgaTGAGCCATCTTTCTGCAGTTCTGGAGTGACGTGTTCAACCATAAAGTTCTTTATGAGG
>TU250893
TCAGTGTAATTCAAGGATGACcactttttctccttctcttcatACACAAAGGGGTTTCCGTAGATCTGATGGAACTGCTTGAGCTGTGTGATAAAATTTCTGAGATTGATGTCAGTCCAGCTTCTGAGAAAATCAAAGATTGTCTCAAGCATAACTCTCCCTGCAATCTCTCTTCCttcaatcacatttttcctctgtTCAGTCCAAAATTGTAAGGTgttctttattcttttaaacACGCTCTTAGATGGTTCTGCACAGATTATGTCATCATACTGATGCCA
>TU250894
TTTTCAAGCATGAAAATGACTCTTGGATGTTCGTCCAGAAGGGGAGAAACTCATCTTTAGGCAGATTTGGCAGGCAGAGGGCAGAGCAAAGACAATTAAGTTCCCTCCGTTCCAGCTTAAGGTCATACTGCTTCCACAAGTACAGCATAATGATAGCAGCCTTCAGAGGATCCTTAAtgtattcacttttttttgaTGAGCCATCTTTCTGCAGTTCTGGAGTGACGTGTTCAACCATAAAGTTCTTTATGAGGTTACTTACCTAATATAAAAAAGCAGAACATTAGTATGCATTCTTCTTATTCAAGCAAGGAAATAGTCTAGTAGATGTGGTGTCCAAATTACATCAGTAATACTCACATCTTTTTCAGTGTAATTCAAGGATGACcactttttctccttctcttcatACACAAAGGGGTTTCCGTAGATCTGATGGAACTGCTTGAGCTGTGTGATAAAATTTCTGAGATTGATGTCAGTCCAGCTTCTGAGAAAATCAAAGATTGTCTCAAGCATAACTCTCCCTGCAATCTCTCTTCCttcaatcacatttttcctctgtTCAGTCCAAAATTGTAAGGTgttctttattcttttaaacACGCTCTTAGATGGTTCTGCACAGATTATGTCATCATACTGATGCCA

Function

symbol description
rnf213 Enables ubiquitin-protein transferase activity. Involved in several processes, including cellular protein metabolic process; protein homooligomerization; and sprouting angiogenesis. Located in cytosol and nucleolus. Implicated in Moyamoya disease.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250892 False 254 lncRNA 0.43 1 15624104 15624357
TU250893 False 284 lncRNA 0.39 1 15623707 15623990
TU250894 True 651 lncRNA 0.39 1 15623707 15624357

Neighbor

gene id symbol gene type direction distance location
LOC113528053 LOC108277091,LOC108277128,LOC108277120,LOC108275034 coding downstream 6323 15607444 ~ 15617384 (-)
LOC113528397 stk31 coding downstream 28503 15582604 ~ 15595204 (-)
LOC113528505 LOC108277132 coding downstream 42642 15578454 ~ 15581065 (-)
LOC113528654 NA coding downstream 151795 15471777 ~ 15471912 (-)
si:ch73-374l24.1 si:ch73-374l24.1,LOC108259727,LOC108437159,LOC102304961,LOC107556610,LOC102791879 coding downstream 420523 15053544 ~ 15203184 (-)
LOC113528022 rasd1,LOC108274801,LOC103040487,LOC108437878,LOC103468867,LOC106942351,LOC108241306,LOC103140985,LOC106518663 coding upstream 601294 16225651 ~ 16227442 (-)
sox8a sox8 coding upstream 702528 16326885 ~ 16330539 (-)
LOC113528411 adap1,LOC108276756,LOC106601846,LOC103363436 coding upstream 876764 16501121 ~ 16537254 (-)
LOC113527963 rnps1,LOC108411755,LOC107553655,LOC103909923,LOC107673212 coding upstream 914024 16538381 ~ 16545640 (-)
LOC113528041 LOC108276772 coding upstream 990734 16615091 ~ 16634737 (-)
G211774 NA non-coding downstream 75645 15547827 ~ 15548062 (-)
G211773 NA non-coding downstream 75948 15547555 ~ 15547759 (-)
G211751 NA non-coding downstream 113424 15509697 ~ 15510283 (-)
G211737 NA non-coding downstream 150364 15471772 ~ 15473343 (-)
LOC113528255 NA non-coding downstream 150890 15471944 ~ 15472817 (-)
G211803 NA non-coding upstream 2219 15626576 ~ 15627023 (-)
G211805 rnf213 non-coding upstream 4376 15628733 ~ 15629969 (-)
G211806 rnf213 non-coding upstream 6415 15630772 ~ 15631372 (-)
G211807 rnf213,LOC101062534,LOC107701915,LOC107556605 non-coding upstream 9323 15633680 ~ 15633897 (-)
G211808 NA non-coding upstream 10589 15634946 ~ 15635274 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 637595 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 933575 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 1102732 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 1594066 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 1617195 14004169 ~ 14006512 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 526718 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 948188 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 1136875 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 1668416 17292773 ~ 17319719 (-)
G212700 NA other upstream 1761854 17386211 ~ 17425901 (-)

Expression


Co-expression Network