G211856


Basic Information

Item Value
gene id G211856
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15839772 ~ 15840000 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250953
TGCTGATTCATTTCAAAAGGTTGCAAAATACAGAATGCAGAGTATCAATGTGTTTGGTTTCATTTCTGCATGGCCTTGAATTTCTCTCTGACAAGATACTTGCTTGCTTTTTGCTCAAGCAATCCAAAACTGCGTAACGTTTTAACCACATGCTCACTGAACAAAATCATAGAATCACTGGCTCATAGCCTTCAGTAGTATGATGATAATTGAACAAAATTGGCTGAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250953 True 229 lncRNA 0.37 1 15839772 15840000

Neighbor

gene id symbol gene type direction distance location
LOC113528350 LOC108259890 coding upstream 12851 15822782 ~ 15826921 (+)
trnar-ucu_8 NA coding upstream 26441 15813242 ~ 15813331 (+)
rnf213a rnf213 coding upstream 176083 15617283 ~ 15663689 (+)
LOC113527870 pcyt2,LOC108277112,LOC108437168,LOC107701914,LOC105013038 coding upstream 273209 15548504 ~ 15566563 (+)
mafga mafga,LOC108277048,LOC107556599,LOC107739593,LOC107729585,LOC107701907,LOC106533856 coding upstream 305492 15523093 ~ 15534280 (+)
LOC113528274 rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017 coding downstream 560754 16400754 ~ 16494702 (+)
LOC113527936 LOC108276743 coding downstream 705641 16545641 ~ 16549914 (+)
cfap70 cfap70 coding downstream 939776 16779776 ~ 16808650 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding downstream 968875 16808875 ~ 16819268 (+)
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding downstream 992403 16832403 ~ 16971767 (+)
G211838 NA non-coding upstream 133771 15705749 ~ 15706001 (+)
G211543 NA non-coding upstream 350790 15486537 ~ 15488982 (+)
G211540 NA non-coding upstream 368068 15469549 ~ 15471704 (+)
LOC117598819 NA non-coding upstream 635114 15203522 ~ 15204658 (+)
G211338 NA non-coding upstream 829121 15010142 ~ 15010651 (+)
G212033 NA non-coding downstream 306379 16146379 ~ 16148542 (+)
G212029 NA non-coding downstream 312255 16152255 ~ 16153553 (+)
G212030 NA non-coding downstream 313616 16153616 ~ 16154250 (+)
G212172 NA non-coding downstream 736423 16576423 ~ 16616678 (+)
G212174 NA non-coding downstream 738414 16578414 ~ 16584331 (+)
LOC117598752 NA other upstream 848322 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 1217984 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 2345830 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 2394086 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 3465400 12367566 ~ 12374372 (+)
G211913 NA other downstream 78217 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 300330 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 1247284 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 1858673 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 2343693 18183693 ~ 18342960 (+)

Expression


Co-expression Network