G211913


Basic Information

Item Value
gene id G211913
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15918217 ~ 15968759 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU251011
CCTGATAAGTTGCACTAAGGACTGCTAGGTAGCTGAATTGATGTTGGCTAACTACAAAGCAGAAATCACTTACACCTACATATACACAACTTGCAGCTGTGCATATGGCAAACACATCCAAGGCCTGTGGTATAAAAGGTCTCATAAAAGAGGAAAAGGGACAGAACATTGGTAGGAAACAGTACTTCAGTGCTGAAAAGCTCATCGATGCCACAGTGAGCCTATTGATGCCAAATACATTTAGCAGCAAACAAAGAGCAGATGTCAGTTATTCATGTCCAGTCAGCCACATAATCTACTGCAAAACTGACTTAAGGCCAAAGATCGGGATACGCTGGACTTGTACCCGAGAACTGCTGCTACCGCTTATTCACAGtgtgctcatactgaacatccttccAACACACGTAGTACTGCTTTACTTTATACTACACGGTTGTAGAAGAGTaaggcctggtttatacttgatgcATGACTGCATATTTGTGCAGAAACAGTGGCAATGCAAGTGGCACAGTACACGTGCACATCTGGGTGATTAAATGTGGCATTCAAAAGAAGGCACATCAGAACCACAACATCCCTGTCCttcaggtttccaagtcaaactgtaaaatggttAGCGATTTCATGCATggcgatgttaaacacactgacaagctccgtctctcttaaaactttctgTGGTTGTTATTCTCCTTATCTGTCTCAAATTGAAAATGACCtatgaccttacattcaaaagtgtttactaatctagaagatccagaagactggtacacaAGACAGACCTTTCAGTAGCTTTGAAGGccacatgagaggtttttaaaattcaaatactaACCTTAATAGGTAaactggttagtgttagtactcaaaaACTCAGAAAACTGTAGAACTGTATGATTTGAGATACAACACTAGTTTTAGTCAATTGCAGACAAagtcacatggtgctatactgcCCTCACTGTTTACTTTGACATTGGACTAGTAACGTTAATTTCTAGCACGTGCACAAGTGTTATGCCACAGCCATCTTGCGTACATGTAGGCATAGTTACAAGCAAGTATAATACAAGTTTAATGATTTGCAATCCCACAATCTGTCACCAACCAAaagagtctgattcctctcaaatgtttttttcctcagagaGATTTTTGCTTGttactgtcacctctggcttgctcattagggatccaATTCTTCatgcagatttctgtaaagctgctttgtgtcaatgtttattgttaagagcactatacaaataaaactgaatttaattgaattagatctgttaaaatattagaaattcAGTACTTGACAGCAATGCATTGGATATCATAAATATTTCTTCTACAAACAACTAAGCAGGGGCTAAACAAAAGGAAATCAATCTCGGTACAGTCTGCCACATGACAGGATATTTACCAAAGCTTCTTATGCTTGTGTTTATTGGCTTAAAATgaggatgaagtgtgtgttacgACATGGCCATGCCAAAGAACGTTTAACTGCTCACTTTCGTCCCATGTCTTCAATGAAAACAAACTGgcaaacttattaaaaaaaaatgttacttcACAATTTCCAACTTTGTTAGCAAAAACAATAGTTTGGCCAAGGCCAAATTTGACAAACAGGTTAAAGAGTTAATAGCATTCTGGCTCATAAACATGCAACCAACAGACGTATGAAGTTCAGTGGGGGGCCTGCATTTAAGAGCTAATGCTGTGGAGGCAAGCCATTTAAGGCCTTATGGGATTTTAACATGCAGAAACGTGTGCAATATTCAGCACTCAGCAAAACAATATGTGCAAAAACCTAGAGTTAAGAGTTATGTACAGAAATGCCAATCGCCAAGCTGGAATGCATTACTTAGCAGCATCTCATTTGTACAAAGTGAGCTGGACGCTCTTAGCTTAAATTCATTAACGGTAGCATTTTCAGCTCATTTAAAGAAGCCTATGGCTGAGGTTTACGAGCTACGACTAGAACACTGGAACAGTGCTTTTTGGAAATGTATATTCCTCACCACAAGAAGACATACATCCTCCTCACCGCAAGAATCCACATGAAGCAAGTGAAGGGTGTCTGCTTTCCTGGAATCCACTTCCACAgctgctgctgctgctgcttttatCTCTGACAGGCAGACATTGGTTTAGTCAGGCAGAGGTAAGTTTGAAAGGCGCATCACTTCTTCAGTGATCAACCATGGTATCATCCATAAGCCCATTTCCAAAAGAAATTCCTAAATCAGCCGAGAGAGCAAGGGAAATCCAGACTGAGCGCGTGCTTGTGTCGGTCTCCGGGCCACGCATGGACATCCCGGTGTTCAATCCCTGCACAGAGCCAGCCGTCTGCCGGGGCGCGCGCGCACACCACAGTATGGCTCCTCCACATAGGCTGCTTTATCTCCAGGAATGAACAGCAAGCCAAGCgagaacacacactaaaacCATCCTCCAAGTCAAACTCCTCCAAAAAACCCATTACATAAATGCAGGATTGTGGAAACGAAGAGCAAAATCCTCCACGTGCACACTGCATCCGGCTGTAAAACTATGAGAAATATCCATTGAACGGAcacaaaaaatgaattaaatccCCGAAATGGTAATAAACTTCGCGCAGGTTTTGTACAAAACTTCGCCCAAGGCTGTAGCCCTGGAAGGAAACTCCAGGCGCTGTTGGCTAGCACTCCTTCAGCTCCGGTGTGACAGATGTACAGGACGCAGCCTCGACTCTGCCTCTAGTTCCTCCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251011 True 2773 TUCP 0.42 2 15918217 15968759

Neighbor

gene id symbol gene type direction distance location
LOC113528350 LOC108259890 coding upstream 91296 15822782 ~ 15826921 (+)
trnar-ucu_8 NA coding upstream 104886 15813242 ~ 15813331 (+)
rnf213a rnf213 coding upstream 254528 15617283 ~ 15663689 (+)
LOC113527870 pcyt2,LOC108277112,LOC108437168,LOC107701914,LOC105013038 coding upstream 351654 15548504 ~ 15566563 (+)
mafga mafga,LOC108277048,LOC107556599,LOC107739593,LOC107729585,LOC107701907,LOC106533856 coding upstream 383937 15523093 ~ 15534280 (+)
LOC113528274 rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017 coding downstream 431995 16400754 ~ 16494702 (+)
LOC113527936 LOC108276743 coding downstream 576882 16545641 ~ 16549914 (+)
cfap70 cfap70 coding downstream 811017 16779776 ~ 16808650 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding downstream 840116 16808875 ~ 16819268 (+)
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding downstream 863644 16832403 ~ 16971767 (+)
G211856 NA non-coding upstream 78217 15839772 ~ 15840000 (+)
G211838 NA non-coding upstream 212216 15705749 ~ 15706001 (+)
G211543 NA non-coding upstream 429235 15486537 ~ 15488982 (+)
G211540 NA non-coding upstream 446513 15469549 ~ 15471704 (+)
LOC117598819 NA non-coding upstream 713559 15203522 ~ 15204658 (+)
G212033 NA non-coding downstream 177620 16146379 ~ 16148542 (+)
G212029 NA non-coding downstream 183496 16152255 ~ 16153553 (+)
G212030 NA non-coding downstream 184857 16153616 ~ 16154250 (+)
G212172 NA non-coding downstream 607664 16576423 ~ 16616678 (+)
G212174 NA non-coding downstream 609655 16578414 ~ 16584331 (+)
LOC117598752 NA other upstream 926767 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 1296429 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 2424275 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 2472531 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 3543845 12367566 ~ 12374372 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 171571 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 1118525 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 1729914 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 2214934 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 2441082 18409841 ~ 18415347 (+)

Expression


Co-expression Network