G212033


Basic Information

Item Value
gene id G212033
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16146379 ~ 16148542 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU251141
TGTCATCTTTTAGGAACATTTGTCTTACTCTTCATTTGTAATATcatgaatatattaaaatattgttcTAGTAATATTTCAGGACTTTTGTACACTCTTGGGTCTGTGCACATTATATTGTTTGGATGAAGCCACTGCAAATGGGAGAGCAAGATGACCATGGAGTTTTCCAGACCGCTGACAGCAGACAGTCAAGTAACTCTACCATATAAGCAGTCAAGGGTTGCCTGCTGTTGACAAGTCACCCCGGGAGAAGAGTCTTATCATTCTGGAGCATGCTCACAAATGCAACTCACATTACTAACAGTGCAGTACTCATCTATCTGTTTTCATGGAATAATCTCTTTTTCTTTGGAGAGTGAAATGTTGGAAGAAGTACTACTCTTAATGAAATCCCTTAAATTCTTATTATTGTAAGTGTTGTCGCAGATATTCAGGCTTTTGGACTATTCAAAAGTAAAGGTGGGTGTGGCATTGCCTATGAAAGTGTACTATGAATGTACAGAAGGTACCTGGATGTCTATAATCATGTAATCCTTCCTTTCTGACAGGATGAACAGTTttgtattttccttttttcctgtaAATAGTATTTGCTAAGACCTCTGCAAGGTACACGATTCATGTGAACTGTCCCTCTCTTATCCAAATGTAGCTTGCCTATCATATTTAATGGAATAGCTGCTGGCTTAACACTAACCAAACTGCTGCTAGATTGTATAAATTTCTGTTTAATTCTGGAGATGTTACTGTCTAGCTCTTGTCATAACCTTGTTTAAAATGTACTACCTTCGCTGACTGGGCACATATCTGTTATGCAGAATAAATTACTCTCAGtgctttatatactgtataattacaGTCCGTAAATATCTTGTGCCATTTATTAGTAGTTTGTATCAAAACAGCTTGACTGATATTTATATCCCCTGAAGTGTTGATGTATTTGTAACTCAAGTCTCAAGAGTTTTTCCTCTATATTACTTGTAGACATTGGAACAAAATCTTGTTTCATTCAGGACCATGATGCAACACATAatacagcagcacaatacacaGTAAGTACAAATACACATCAGTGTGAGATGCTTGTTTTCTCTATGTCTGTTTACTCCAGTCTTTATGGAGCTGTCAAATTGAGAAGGGCTAGAACATGTGCTTTCTTGGGCAGTCATGTTCCTTTAAATTCCTTGCAGCTTCTTTCACTCGTCTTATCCTGAGAATCCTTTGCCTGCTATGGTTCTTGGTAAAAATGGGAACCAGGCTATTGGTGTGATCACATGTATCTGAAAGGGTTGCTTTCTGTGTCTTTTCCCATGTTTGGACATGCCAGTGTTTGAAGGTGCTCTCTTTAAATAGAGTCTATTTCTAGTGTTTGCTCTAGTTCTTGTTCAAATGTCACTTTACTGCAAGAACAGTTGTGTTTAAAATCAACAGAAGCTCTGCTACCTGTAGATATATAGAATGCACATCATTTAGATGAATAAAAGAAACTGTCTGTAGATATTGATACAGTGACCAAACCCTTGCAGGCTAACTATACGTTTTGAAAGCTTGCACATTAGTGCTAAATTCAGTGCTACAGGGTAGTGAGAAAAACAGAGCATGCTATGTGATACTGTAACTGCATCCATAAACAGatcttttgcattttaattagaGGTTCATTAATCTTAAGGATGAACAGAAATAACAGTGGCAATTCCCTCTCCATTCATTACATGTTCTTGTGTTGGAAGCTTCCCTCACCAGAGTGAACATGGCGTTACTGTATGTTGCATTGCATTATGGGGAAACATCGCCATCTGGTGAGGGTGCGGGTTTGCTGACCCTCTGATAAACATAACATTAATTCAGTTAACAATGTAGACTAGTATGATGTGGCAAACATTATGTtgtcctctttcttctctcatACAATCAGTTTATAATTTTGCAAGTGTTCAATGCCAGGCAGTGACCGAGTTTGAATACTTGTCAATGACTCAATGACTGTCAATTAttctatgttttattttagtgcTTTCATTTTAGTTACCACTAACCAAACATAGCATTTGTATGCTCttgtaaaatgaaatatgtttaatgttaacatACTTCatactgatgatggtgtttgttcagtgtttttacttggaattaaaatgctttttcattAAAC

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU251141 True 2164 lncRNA 0.37 1 16146379 16148542

Neighbor

gene id symbol gene type direction distance location
LOC113528350 LOC108259890 coding upstream 319458 15822782 ~ 15826921 (+)
trnar-ucu_8 NA coding upstream 333048 15813242 ~ 15813331 (+)
rnf213a rnf213 coding upstream 482690 15617283 ~ 15663689 (+)
LOC113527870 pcyt2,LOC108277112,LOC108437168,LOC107701914,LOC105013038 coding upstream 579816 15548504 ~ 15566563 (+)
mafga mafga,LOC108277048,LOC107556599,LOC107739593,LOC107729585,LOC107701907,LOC106533856 coding upstream 612099 15523093 ~ 15534280 (+)
LOC113528274 rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017 coding downstream 252212 16400754 ~ 16494702 (+)
LOC113527936 LOC108276743 coding downstream 397099 16545641 ~ 16549914 (+)
cfap70 cfap70 coding downstream 631234 16779776 ~ 16808650 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding downstream 660333 16808875 ~ 16819268 (+)
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding downstream 683861 16832403 ~ 16971767 (+)
G211856 NA non-coding upstream 306379 15839772 ~ 15840000 (+)
G211838 NA non-coding upstream 440378 15705749 ~ 15706001 (+)
G211543 NA non-coding upstream 657397 15486537 ~ 15488982 (+)
G211540 NA non-coding upstream 674675 15469549 ~ 15471704 (+)
LOC117598819 NA non-coding upstream 941721 15203522 ~ 15204658 (+)
G212029 NA non-coding downstream 3713 16152255 ~ 16153553 (+)
G212030 NA non-coding downstream 5074 16153616 ~ 16154250 (+)
G212172 NA non-coding downstream 427881 16576423 ~ 16616678 (+)
G212174 NA non-coding downstream 429872 16578414 ~ 16584331 (+)
LOC117598846 NA non-coding downstream 463655 16612197 ~ 16613446 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 53 16140330 ~ 16146326 (+)
G211913 NA other upstream 177620 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 1154929 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 1524591 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 2652437 13464085 ~ 13493942 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 938742 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 1550131 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 2035151 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 2261299 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 2276637 18425179 ~ 18434528 (+)

Expression


Co-expression Network