LOC117598846


Basic Information

Item Value
gene id LOC117598846
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16612197 ~ 16613446 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU251289
TTAGCCTCGGAGCTCCTTTAAAAGCACGGCGTTGGCGATGCTAAGgAGTTGGGGGACGCCGGCAGGGAGGCTTGGCACCTGGTGGCTGGgtacctgtgtttgtgtgtgtgtgtgtgtgtttcacctttCTGGCAGTGTAGTGTCACCTGGGTGTGctgtgcagtgtatgtgtgcgctTCACGTGTGGTCTTTTTGGACCCTCCTTCCAGATCGCCTCCCTGTGGTAAGCCCCTATCctaatttatgtgtgtgttctgtcctgTAGGCCTACAGAATAACT
>XR_004579398.1
CGGTGTTGTGTCGCACCTGTATGACATCACTAGATGCGACTGATTTGTAACAATTGTTAGCCTCGGAGCTCCTTTAAAAGCACGGCGTTGGCGATGCTAAGgAGTTGGGGGACGCCGGCAGGGAGGCTTGGCACCTGGTGGCTGGgtacctgtgtttgtgtgtgtgtgtgtgtgtttcacctttCTGGCAGTGTAGTGTCACCTGGGTGTGctgtgcagtgtatgtgtgcgctTCACGTGTGGTCTTTTTGGACCCTCCTTCCAGATCGCCTCCCTGTGGTAAGCCCCTATCctaatttatgtgtgtgttctgtcctgTAGGCCTACAGAATAACTGAACCCTGGttatatttgcagtgtttgctattcttttttttttttatgagttgtAACAAAATCATTGAAAGGAATtcaataaagaaattgtttagTGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251289 False 280 lncRNA 0.54 2 16612253 16613345
XR_004579398.1 True 437 lncRNA 0.46 2 16612197 16613446

Neighbor

gene id symbol gene type direction distance location
LOC113527936 LOC108276743 coding upstream 62283 16545641 ~ 16549914 (+)
LOC113528274 rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017 coding upstream 117495 16400754 ~ 16494702 (+)
LOC113528350 LOC108259890 coding upstream 785276 15822782 ~ 15826921 (+)
trnar-ucu_8 NA coding upstream 798866 15813242 ~ 15813331 (+)
rnf213a rnf213 coding upstream 948508 15617283 ~ 15663689 (+)
cfap70 cfap70 coding downstream 166330 16779776 ~ 16808650 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding downstream 195429 16808875 ~ 16819268 (+)
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding downstream 218957 16832403 ~ 16971767 (+)
LOC113528633 NA coding downstream 382409 16995855 ~ 16997652 (+)
LOC117595691 NA coding downstream 383920 16997366 ~ 16998694 (+)
G212174 NA non-coding upstream 27866 16578414 ~ 16584331 (+)
G212030 NA non-coding upstream 457947 16153616 ~ 16154250 (+)
G212029 NA non-coding upstream 458644 16152255 ~ 16153553 (+)
G212033 NA non-coding upstream 463655 16146379 ~ 16148542 (+)
G211856 NA non-coding upstream 772197 15839772 ~ 15840000 (+)
LOC113528544 NA non-coding downstream 33915 16647361 ~ 16649303 (+)
G212210 LOC108276786 non-coding downstream 57213 16670659 ~ 16688548 (+)
G212201 NA non-coding downstream 63017 16676463 ~ 16695790 (+)
G212219 NA non-coding downstream 77555 16691001 ~ 16693399 (+)
G212258 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 non-coding downstream 147706 16761152 ~ 16765092 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 465871 16140330 ~ 16146326 (+)
G211913 NA other upstream 643438 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 1620747 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 1990409 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 3118255 13464085 ~ 13493942 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 473838 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 1085227 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 1570247 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 1796395 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 1811733 18425179 ~ 18434528 (+)

Expression


Co-expression Network