G212210 (LOC108276786)


Basic Information

Item Value
gene id G212210
gene name LOC108276786
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16670659 ~ 16688548 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU251333
CTTTTGCAATTATCTATCGATCAGTGCATTAGTTCTCTTGTTGCCAAGCAGAACTCCTTGAATGGCCAATCACATCAAAGAAAGACCAGAGTGAACTATTTTAATGTATCATGAGTTTGAGTTCATAACacacaacattttaaataatgtttagtCATGATTACTTGATTGTTTAAGTAAAACAATCTGTAATTATGTTGGGTTGGAGAGCTGAGGTGTCAAGTCATGTATCCATCTACACTTAAGTAGATAATGTAATGCAGTGGTCCATGAAATGGGTGATGGGGATTTCCACAAAAGGCACTAGAGAGGGGATATTGGCTAGTATATTTTAAAGACAGTATTGAAATAGGCACCACAATCTGTAGGAGTTTTCTACATTGTGATGTCTTTGTTATTGACAAAATTCCATCATGcgctaattttctataaaacttTTGATAATCTCTGCAAGGATCACATGAAATAAAGAGAAACTCTGGAAAATGGTGTTCATTATATAAGGTGTTTAGTGccataataaaatacagtgaaTACATATACACTTTAGTCTTTAGAAATACTGACTTGAACAcaaaattgtacaaaaaaattaagagCTCACTGATTCATTACTTTGAAATGGCAGCCACAGTATATACAAAAGAATTGCAgtacatattcatttttatttttgcaaaatatgTTAACAAATAGTATACACAGATCAATCAACTACAGTGCAGTTCTGCACATATCTGCGGAGAAGCTATGTAACAATTCACATTAGATCAAATGtaatcaagtaaaaaaaaaactaactgcAAAGAAGACTTTTCCAGATAAACCAACTCTCTTGCAAGGtctatattattttttagatttataataGTAAGTCAATGATGTAGTTTTAATCTAGCCttgatttaatgattttaaacaaaGTTTCTTTTCCAAAGATTAGAAGTTGTGGGTTGTTCTCATGCTACACTAATGCATGTACTTTTTGTTTGTCAATGTGAATGTGTGCTTAAGTAAACAGATGCCTTGAAAGAGGCTAGCTCTACAATTCCCTTTGGTCTTACTAACCCTATCCCTCACACTAACATTTTATCCCGCTTAATGTGTTGCTTAAAATAAGTTTTAGCatcaataataattttgttaaaataaataattgttgacaTCAGAGTTGTTCTTACAGTACATATACTGTCTGTGCTAACAGTTTAAAACCTAATCAAACCAGAATAATCTTGTTTGAATTTCCAGCTCAAAAACctgtgcaaacaaacaaatggcaGATTTGAAAGTATGCACTGTGTAGATGCACTCAGTTGTGGAATTAACCTAGAGAAGTTGTCAGTGAACTTTATGTTGTTAATGGTAAGACATAACTTAAAGAAAAGTGAATTGTGGTAATATTATACAGGTTTCAGGATTTTAAATtgtatgaaaatttttttttacatccatcAATatgaagtaaaatgaaaaataggCTTTTTCCTATCCTCTGAAGTATTATTGCCTTGCTTATCTTCCTTTGATTAGGTCCGTTTCACTGCACAAAGCTTGTGGGGAGAGGGGTTCACTGTAATCCCAACCACACCTGTGAGGTCCAGCTGATCCTCTGACACCCCTGGTGGAGGAGTGAAGCGGAAGTGCTGCAGGAGGGagctgaagaagaggaagagctCCATCCTGGCCAGGCTTTCTCCCAGGCACACCCTGCGCCCTGAAAAAAAGGCAGGAAGGCATCTTTTTTAACAAATCGTCCCTGTTCATCAAGGAAGTTTTCTGGGTTGAAGGTGTGTGGGCTCTTCCACTGACTCTCATCCCTCAACGCAGTCATCAGTAGAGGGTAAACAGTTGTGCCCTTGAAGAGACAATGAATCATTAAGTATGAAAGCAGTAGTTTCATAATACATTCATGGCACATTTTAAGCTGAGGTGAATTTGATATTAACATTACCTTCTTAATAAAGAAGCCATTGAAGTTCACATCACAGCTGGTGGTGTGGGGTAGACTCATGGGAATTATATTGGCCAGTCTCTGGATTTCATGGATCACTGCATCTGTGTAAGGCAAGTTCTTCCTGTCCTCCACCACTGGCTGACGACCTCCAATCACCCTGTCAATCTCCTCATGGACCTGAACTTCATGTGTAAACAGGGTTTTACATTCATGATTAGCAGACTGTAAATCCACACAGACCAAGTATCAGAAATACTGTTCCTATGTTAGTGCACTTACCCTGTATGTGAGGGTACTTAGCCATAAGCAGCATCCCCCAGCGCAGTGTTGTGCTAGTGGTGTCAGTGCCAGCAACAAAAAGATTCATCACTGTGGCGATAAGATTCTTCTCATTGAAACGAGAGTTTTTCTGTCCTGATTGCTAGGAGACCAGAAATCACAAAGCTAACATTTACAATTCACTTAATTACTTATCAGTCAGGAGATGCAGCTGGACTGCATTTTTTCTTGCATACAGGTTTCTATGCATTTTAACGTTGTTTGTGTTCTGAGAAAATGTGAGAATGCAGCCATGCAGCTAATTACTATGAACTCTTGAAAGCATGAATTCACATGCTGGCAAATACCAAATGCAAGCAGGTTTAAGcaactgattaaaaaagaaaaagtgtgttgtaaatagttaaatataaaaacagattgGCTAGGCACAATTCATTCTGTCTGtccaatcaaaataaagcatttcCTACCTCATCACTTTGTTTGCGGAGGAGAAAAGAGTCGACAAATCCTCTGCGTTCCTCTGGATTTAGCGTTTCCTGAAGACCACTCACCAGCTCACGAACctgcttcttgtttttctcaccattcgcATGGAGTGTTCTTCTGCTTTTCAAGAATGGACCTATCCAGGGAAGTATGTTGAAGATCTTATAATAGTAGGTTGGAGAAAAAATGGAAAGtaatttgtcattattttgtaCACTTTGTGGCACATTGCCATGCAAATGTTGGAACAAACTCTACATGCCATGCCATtagcacaaacactacactcagACATTCACGTGAATGATTTTAGAGCAACACAGTTCACcagcatatattttattaatagaatgtcgactgtttttttttttctgtttacagtGATGTACATTCTCAATACCAAAACTATACTAAAAGtgcaaaacatttctttaactGACTGGTCAGCGATATGCAGCTGCTGCTTGTCGTTTGTCCAAaaaattattcagaaaatcccATTTACAACCTAAAGTAAAGTACATGTTCAGTGTAGTTTCTTGATACATGAACATTATATTGGTTAACATTTAAGTTGTGCGCATCCCACcaaattaaatgaaagattAATATGGAGCATCAGTTTGTTACTAATAATTTCATACACTGCATGTAAATTCATGTATATCCATCCATCAACTCTGAGTTTTAAATCTGGCTTTTCCTTTCAGATATACAAGAAGCTTTAGTCGTTACTTACTCGCATAGAAGCTGACCCACCAATCCTGACATTCTCATTTGCCCTTTTGACCATTTCTTTGAATTGAGGATCACTGTACTCAAATCTGTTTCCATACACAATGGATGAGATGATGTTGGAGACAGCATAGTTCATTGGTTCAGTTGTGTCAAATGGTTTCCTCCAAAGCTCTCAAACACTTCTTTAAGGTATTGGATTTCCTCAGTGATTTTCTCTTCACTGCCTCTCTTGCCCATTCCAAAGTCTCAAGGTTTGTTAAAGCAAAACGTCTCATCTCTTTCCAGTTCTCCCCATTAGAAAACAAGATTCCTAAAGACAACAGAGCACATGTTCAATTTTCATTCTGTCATCAGTTATTTCTCTTCACTTTGGTTTATGTTTCATACACAGTTAAAAGGGTAAATCTTGTTAAATCAGTTTTGttggataataaataaatgactatcAAATAATGTTCAGATGTGAAATATATAGAGACTATAATTTAAGCTCAACTGCACACAACTGATATTGAATGTGTGATTGATTTCTCTTTCCCCAAATTCCTCAGCATAGTTAACAAGTGCttgtttcactgttttgtaCCCTGCTAAGACAATGATTTTCTTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251333 True 4078 lncRNA 0.36 5 16670659 16688548

Neighbor

gene id symbol gene type direction distance location
LOC113527936 LOC108276743 coding upstream 120745 16545641 ~ 16549914 (+)
LOC113528274 rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017 coding upstream 175957 16400754 ~ 16494702 (+)
LOC113528350 LOC108259890 coding upstream 843738 15822782 ~ 15826921 (+)
trnar-ucu_8 NA coding upstream 857328 15813242 ~ 15813331 (+)
rnf213a rnf213 coding upstream 1006970 15617283 ~ 15663689 (+)
cfap70 cfap70 coding downstream 91228 16779776 ~ 16808650 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding downstream 120327 16808875 ~ 16819268 (+)
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding downstream 143855 16832403 ~ 16971767 (+)
LOC113528633 NA coding downstream 307307 16995855 ~ 16997652 (+)
LOC117595691 NA coding downstream 308818 16997366 ~ 16998694 (+)
LOC113528544 NA non-coding upstream 21356 16647361 ~ 16649303 (+)
G212172 NA non-coding upstream 53981 16576423 ~ 16616678 (+)
LOC117598846 NA non-coding upstream 57213 16612197 ~ 16613446 (+)
G212174 NA non-coding upstream 86328 16578414 ~ 16584331 (+)
G212030 NA non-coding upstream 516409 16153616 ~ 16154250 (+)
G212219 NA non-coding downstream 2453 16691001 ~ 16693399 (+)
G212258 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 non-coding downstream 72604 16761152 ~ 16765092 (+)
G212412 NA non-coding downstream 81380 16769928 ~ 16770128 (+)
G212441 NA non-coding downstream 121763 16810311 ~ 16810750 (+)
G212445 LOC108276517 non-coding downstream 154400 16842948 ~ 16914573 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 524333 16140330 ~ 16146326 (+)
G211913 NA other upstream 701900 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 1679209 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 2048871 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 3176717 13464085 ~ 13493942 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 398736 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 1010125 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 1495145 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 1721293 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 1736631 18425179 ~ 18434528 (+)

Expression


Co-expression Network