LOC113528039 (LOC108276772)


Basic Information

Item Value
gene id LOC113528039
gene name LOC108276772
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16572545 ~ 16598688 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU251473
CCTGTTCACGGCTGGACAGCTTTATTAGAGTCTATGCAAACAGTCCAAAACACTAGGCAAAGGCAATGTCAAAAACAGGCTTAGGTCAGGCTACCAGCAAACAGGATAAACTAGATAAggcaaaacacagaaaacaagcAATAAGAGCAAAGGTCAGACAAGGAAATCAACAGCAGAGATAACAGGCTTGGTAATGTCAGAGAACAAAGGTAAACTGAGTGTATACTTCACAAACTGTAAGTGAATGAAAATCTCTTATAAAGGGTGCTTGTGATTGTGTACAGGTGTGCATAATCAGAGGTCCAGTGATTGAGAATGaggcagtgtgttagtgttctgggaagtggagtctggagtggccatgtttgtaggccacatTGCATGCTGGGGACTGGAGTTTGTTGTTGGGGTTTGCCTGACCCTACACATTAGTATACTTAATGTGACT
>XM_026916292.2
CACTTAAGCTACCAGTCTTGCAACCTGagcagtttgtttttcactccGCTGCTTTCTGTGTTAAGCGAAACACATTTGACTCAGGTTACCCCTTTAACAATGGCTTTTTGGGAAGAGCTTCTCCTGCAACCTACAAGTACAGGCATATTGCTTGGTCTTGTGATGATGTTTCTGCTGATTGTTTATCTCCGTTCTTCTGATGCCAGCTCTCAGGAAGAAAACAAGGAGCCTCCGGGTCCTAAACCACTGCCTATCCTGGGAAACATGCTGCAGCTGAACCTCAAAAGACCCTACCTGACTCTATGTGAAaTGTCAAAGAAATATGGATCAATATTCACTGTGTATCTTGGGCCTAAGAAAGTAGTTGTGTTAGCAGGATATCAAACTGTCAAACAAGCACTTGTAAATTATGCAGAGGAATTTGGAAACAGAGATATTACTCCCATTTTCTTTGACATGAGCGAAGGATATGGAATTCTGTTTAGCAATGGTGAAAACTGGAAAGAAATGAGGCGATTTTCCCTCAGCAACCTTCGAGACTTTGGGATGGGCAAAAAAAGGAGTGAGGAGAAAATCATTGAAGAAACAAACTATTTGAGGGAAGTGTTTGAAGAATTTCGGGGGAAACCATTTGATACTTCACAGCCATTAAATTATGCCACCTCCAATGTCATCTCAGCCATTGTGTATGGATGCAGGTTTCAATACAGTGACCCTCAGTTCAAAGAAATGGTTAACCGGACCAACGAGAACATCAAGATTAGTGGTTCACCTTCTATTCTGATCTATAATATGTTTCCCTGGCTTGGATGCTGGCTAAAGGACTATAAGCTCATGATGAAAAACCGTGAGCAAAACCTAAAGCAAATAAAGGAGCTTGTGGACGATTTGGAGGAGACACTAAGTCCTGAGGAAACCAGAGGCTTGATTGACTCTTTTCTTATACGCAAAAAGAATTTAGAGACAGTTGGAGATAAAGACACTTTGTTTCATGAACAGAATCTCATTATAACAGTTTCCAACCTGTTTGCTGCTGGTACTGACACGACTAGCACAACACTGCGGTGGTGCCTTCTGTTAATGGCCAAGTATCCTCAGGTTCAGGACCACGTCCAGGAAGAGATTGACAGAGTCATTGGAGGTCGTCAGCCACTGGTGGAGGACAGAAAGAATTTGCCTTACACAGATGCAGTGATCCATGAAACTCAGAGACTAGCTAACATAGTACCCATGAGTCTCCCCCACACCACTAGTTGTGATGTTAAATTCCAAGGCTTCTTCATCAAGAAGGGTacctgtgtgtttcctctcctGACATCTGTGTTGAGGGATGAGAGTCAATGGGAGACCCCACATACCTTTAATCCAGCACATTTCCTTGATGAGCAAGGCAGATTTATTAAGAAAGATGCCTTCATGCCTTTTTCTGCAGGGCGCAGGGTGTGTCTGGGAGAGAGTCTGGCCAGGATGGAGCTCTTCCTCTTCTTTACCTCCTTAATGCAGCACTTCTGTTTCACTCCTCCACCAGGGGTGTCAGAGGATCAGCTGGACCTCACTCCAGCTGTGGGCCTTACATTGAACCCATCTCCCCACAAGCTGTGTGCAGTTAGCCGTGCATCACACATGTACTCTTAAGACCTAATTTACTAAAACACCCTTAATTATATTCAAAATGTTATGAAACTTGTAAATATACTTACAATTTATGTAGTTAAATAtgctaaaaaatatattattctaaTTTTTTGATCAAGCATTTGCAGATAAATTTGGATAGTTgataacacaaataaataaaataaaattgtaatatataACTTACTGTGGAATATacttttagtttaatttttaattttgcttaaTCATCGGGGCTGATCACATAGCCCAGGAACGAAATGATGCGTTGGTGGAATTCACACTTTTCTCCCCCTTCACGTACAGCTGGTGTTGCAGGAGGCACTGGAGAACCTGGCGGACATAAGTCTTGAATGAGGGGGAATAGACTAACAGAACACCAGATGTGTTTTCAGAAAGCACATTCTTTCATGTGGTTTCAACTGTGGTTTCACACGAAAGACCCAGCTGATGTGGGGGATGTGGATGGTCTGATGTACCCCTCCTGGAGTGCCTCCTGAATGTACTCCTCCACCGCATGCCGCTTGGCCTTGGACTGGGGGTAAACTTCGGCTGTGAGGGGAAGTGGTTCCAGGTAGCAGCTCTGTGGTGCAATCATAAGGATGATGTAGGGGTAGCCTGCTGGTCTTACTAATTTCAACTTATTGCTGTTCCCTACAGTTCCTCCCTTGGTTTCCCAGGGGGAACTGTAAACAAGGTGTGGTTCTCAGGGCTTTCTATGGTGGTGGATGCTATGGTGAGCTCAGGTGTTTGGAAACAGTGATTCAGGCAGTATTGTGTaagaaattagctgtttaggttaagaTGCCCACATTCTCCAGCAAAATATGTAtgagattagcagatcagctcagaaggggaaattttgcaaacttaatattttaatagctgaacaactattcgtccagcaaTAAGTTGAAAttagtatatttattaattgtgcatgggATATTTACCTTCGTGGCCACCAGCAAtgatatcctaaatatagtgaaacaatatattaagagcacagtaacaagatcagcagtttaagGCAGAAAATTGTAAGCACAGAGATACaagacacttgcctttaaaatcaAACAAGACTATTCTaagacacagaaactaatctaacaaacacatgcatgtacacacacacaaacgggTGAAAATGGTTTTGAACAGAGAGTGAATTAAATCCCAAGTTTGTAAGACTGTACACTGTtcctcagaccatgacctgaatgaaccatcaacttatcaaacttatattaaatgcaccagttcagctagaatctggaggtactctacttgcgtttgtgttgccagggatttCCTTGTTGGATCATTGTTTGGAGGGGTTTTCCGGCAATGTTGATTGGTCagcggtctggttggccttatgtagcatCTCAAAAGACCAAtgagagataaacagagtgaggcacGAACCTGGTGGAGTCTCataggcgggttgcaaaactttgatgaagtggttcacagcggtgcaaaggcgagagttggaggctttgcaggaaccaGGCTGGATGCAGAGTCTCAGAGCGAATGTGATCTACTTGTGATGTCGAGGGGCGAGGAATTCtgaagctcttggttgatgagaacTCCTGGTGACTTGTTGGAAGAGACTCCTGCAGATGATGGTTGAAGACACTTCCCACAgttgtggatggagactctcttgagctgttagttgaagagaACTCTCCTGGAATAGTTTGGTGACGAGAGCTCTGAAGATATTAAAAGAGACCTCTTGCAGATGTGTTGGATAAGACTCAGAGTTGTCAAAAGAGACTTCTTGTGGAGATGTTGGtagatgagactcagagtttcctttgtgtcaggggttttaaccctttccagctgggctgaccccaaagtgctTGCTCCAGTCAGCAgaatcttggggcagggtgtaaactgcattctcctcctctgacactaattagcATACTGGCCTCCGAGTTATTTGCTTTTTCTAAGTTTTCACAAGGTAAAGTTAGAACTTTGGTTATGAATTCTGTAACATGgatgtaatacattgtactccAATTTACTTTATCCCAACTCTATGTGACCTAGTGGCTACAGACATGATACATATAAGGCATGACATTAAAAAGGCAACAAGTTTTCAAACTATggtatattaaattttaaaggtCCTTGTTCTTCCAGGAGACATAAAGTAATCTTAtacagtctgttaaagctgTAGTGGTGGTGAGATCATGGTGATAATTGTATTCCTGGGGGaaagaacaaaggtctcattccagaAAGCTAGCCTGCATTGATTCATTCTTGAGGCCTCCCTGGGTGAGTCACCCCCCCTTTTGGTTATCAGATTTATGGCTTAGGGTCCTTGGGTGTCATCCTGTTGACCAGCCTTCCAGTGTTGGCCAATGGCCTAAATCAAAAGGTTTGACAgggttcctcttggctgagatggttcatcctctggtcagggatgttctAATGTTTGCTTTGTTGTTCACAGGATAGCTGAAGTTAGGCAATAATAGGTGGTAATTCACTCCACAAAGTCTGTGAGTGGGGCTTCATTGTTTTATgatgttcttgtttttctttcttgaaacCCGTGGGTGAGTTGTTTATCTGACCAGGATATTTTGGGATTGTGTAGCTCCATCCACGGCAGGCCCAGGACCACCAGATGTTTGTGTGAATGATGGTGACCAGCAGCATGATGTGTTCATGGTTGAGCGCACTGACCTAAAGGGGGGAGGGGCTGGGTACTGTCAGTGGTAGTGCCTCCCCTGATGGGTCCCCCAACGATGGCCTGGATCTTCAGTGGGCATGGCAGTGGATGAGTGGGGATGTTCAGACGGGTCAAGGTGTCTTTATTGATGAAGTTCCTCACTGCCCCCTGGTCGATCAGCACTTTCAAAACAGAGAATAATcctggtgagagagagactggaacTGGAATCACTTTCTGCGAGCTGGGGCTGATGTTCCTGTTCACGGCTGGACAGCTTTATTAGAGTCTATGCAAACAGTCCAAAACACTAGGCAAAGGCAATGTCAAAAACAGGCTTAGGTCAGGCTACCAGCAAACAGGATAAACTAGATAAggcaaaacacagaaaacaagcAATAAGAGCAAAGGTCAGACAAGGAAATCAACAGCAGAGATAACAGGCTTGGTAATGTCAGAGAACAAAGGTAAACTGAGTGTATACTTCACAAACTGTAAGTGAATGAAAATCTCTTATAAAGGGTGCTTGTGATTGTGTACAGGTGTGCATAATCAGAGGTCCAGTGATTGAGAATGaggcagtgtgttagtgttctgggaagtggagtctggagtggccatgtttgtaggccacatTGCATGCTGGGGACTGGAGTTTGTTGTTGGGGTTTGCCTGACCCTACACATTAGTATACTTAATGTGACTCTGTGAATTTAAAGTGAAAGTGAATATACCTTCATGCTAAAGGGACTTTTACCAAGTAAAATGTGAATGTTGaactgttaaaaatatatttctgaaaaaagtaaagctaaaatgttttgtttaaaatcttttttactgacatttttttctaacaCAAACAGGCCACATGAGTACAACCTTGTATGCAGGCCCAATTCTTCTGGAGCTACTCCACATTCAATCTTTGAAATCTGATGACTTTAGATGACCTACTAACCTTCACCTTCACAAACATCCGCAAGTGACACTGCTCCTACTGCCACCTTGGAGGTTGCCATATCATGCATTGAATGGCATTTAATAGAAGAAGGTTCCTCTTGACTAGCTCCAGAGGCCATTTATTGCTTGACTGGACACATTTTTATCTGCAAGAGCAGGTAAATTGATAggtttattcaattcaattttatttgtatagctgtAATGTGAGGCCCAAGGTGAGTCCAGGAAGGTGGATGCAAATGTAGAATCtctttaacaaacaaaaaaaagcaactaaGAAACAAGCAAGGACTGggaaagaactaaaaaaaaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0070330 aromatase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07423 CYP2W1; cytochrome P450 family 2 subfamily W1

RNA

RNA id representative length rna type GC content exon number start site end site
TU251473 False 448 lncRNA 0.43 1 16573120 16573567
XM_026916292.2 True 5647 mRNA 0.43 9 16572545 16598688

Neighbor

gene id symbol gene type direction distance location
LOC113527963 rnps1,LOC108411755,LOC107553655,LOC103909923,LOC107673212 coding downstream 26905 16538381 ~ 16545640 (-)
LOC113528411 adap1,LOC108276756,LOC106601846,LOC103363436 coding downstream 35291 16501121 ~ 16537254 (-)
sox8a sox8 coding downstream 242006 16326885 ~ 16330539 (-)
LOC113528022 rasd1,LOC108274801,LOC103040487,LOC108437878,LOC103468867,LOC106942351,LOC108241306,LOC103140985,LOC106518663 coding downstream 345103 16225651 ~ 16227442 (-)
LOC113528053 LOC108277091,LOC108277128,LOC108277120,LOC108275034 coding downstream 955161 15607444 ~ 15617384 (-)
LOC113528041 LOC108276772 coding upstream 16403 16615091 ~ 16634737 (-)
LOC117595684 NA coding upstream 72457 16671145 ~ 16688599 (-)
LOC113528100 LOC108276786,LOC108438908 coding upstream 72457 16671145 ~ 16677834 (-)
abca3b abca3,abca3b,LOC107742093 coding upstream 92822 16691510 ~ 16736757 (-)
ccnf ccnf,LOC103461596,LOC107683020 coding upstream 139253 16737941 ~ 16752068 (-)
G212319 NA non-coding downstream 75313 16478891 ~ 16497232 (-)
LOC113528275 NA non-coding downstream 116698 16453560 ~ 16455847 (-)
G212018 NA non-coding downstream 532146 16039756 ~ 16040399 (-)
G212016 NA non-coding downstream 535228 16037116 ~ 16037317 (-)
G211935 NA non-coding downstream 603770 15892024 ~ 15968775 (-)
G212395 NA non-coding upstream 82496 16681184 ~ 16690337 (-)
G212463 NA non-coding upstream 233280 16831968 ~ 16832219 (-)
G212626 NA non-coding upstream 579840 17178528 ~ 17179748 (-)
G212637 NA non-coding upstream 685812 17284500 ~ 17284707 (-)
G212643 NA non-coding upstream 693672 17292360 ~ 17292723 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other downstream 368554 16151075 ~ 16203991 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 1586433 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 1882413 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 2051570 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 2542904 14017615 ~ 14029641 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 162544 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 694085 17292773 ~ 17319719 (-)
G212700 NA other upstream 787523 17386211 ~ 17425901 (-)
LOC113528038 caskin2 other upstream 791498 17390186 ~ 17518527 (-)
G212750 LOC100136012,LOC107575789 other upstream 1076139 17674827 ~ 17675284 (-)

Expression


Co-expression Network