LOC113527915 (LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698)


Basic Information

Item Value
gene id LOC113527915
gene name LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16761232 ~ 16765341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU251514
TGATTGGTATAGCTGGCACAGGCGTGACCTGCACCTACAATGACCTCCCTCAGACCAAGGTGGTGTCAGTCGTCTTGCTGATTGCTGGGCTCGTCCTGGTGGTAATGGCTACTGCCTGTTGGACAGTACATAAGAAGAAAcgcaggaaaaagaaagagggaggcCCCTTTACCACTGAACAGTGTCCCCTGTGAGGAGAGACTAGAAGGAGGAAGACACTTTTGAATGAACACGGGGAGTTGTGATGCCACCTTTGTTTAGCATTTCTTTTTGCCAAACTTCAGTCCATGTGTTCACTCAGGTAGCAGCAGTGTGAACATGCAAATAGGACAGATGGACAGTGTATTCAGGACACCCCTAGGGAGCAACAGAACCCACTGGACAAGTATGAGGGTTCATACAGATGGTTTACTGCCACTCAGCAAGTGTCTAGTGTCAAAACAACTCCAGAGCCACATGCACATTTGAGACACTTAACGCTTGGACCGTAATACCAAGCCACTGCTGGAGTCAGTGCTGCCGTCAACACAGCCGTCAGTCCCCCGCATTCCTGCTCTTGGGGCCAAATGGCTCCCCAAGGCTAGCAAAGAAGTGATCCAGAGAGGGCAACCAGACACCGCGACGAAAAGCAGAAGTGCAACCCCGTAATCGTCGCACGTCATTCTCCTGTCCTGTGACACTACAGCAATGTGTGAGCTTTTTTACGCAATGGGAGAGTGGAACCTGAGCTGAGCCTCAGCTAGTCCTTACTGGCGAGAGAGGGCATGAGCAGGAAAcgctgcctgtgtgtgtgcgtgcctgtgtgtgtgtgtgtgtgtgtgctgcaggaaGATGGAGAACAGCAAGCATGGTGCATGGTATTCCACTTCATTCTCTGTCTGAGTTTTCCGATGTCAGGCCGGGTGCAGTGTTAGCATATAGAGCAATGACCATGTTCCTGGAAGCCTACCTTCTTACCTAATTCGGTTCCTGTCTGCAATCAATAGAGCTGATCTGGCTAGGCAAGTAGATTGATTACCTCTAGCACATGTGTTGAGTTAGAGGTGGAACTGAATTCTATAGGAAGGTGTGCTCCTAGGACCACCAGAAGCAGTTTAGGTGAGGTTTAATCTAGAGGATTTTTAGCATTCACTGTAACTATGTGCCTCTGATCATTCTCAGGCCCTTGCAAAGCAGCATTTGAGGAAAATATACACGGAAAAGGTTTAAATATCAAACCAAAGCCCTTTTGTTTTGGGCTAGTTGGTGAAAAGGAAATCTTGTCTTCAGAGATAAGACTTCATTTCCCTGCTTCACAGAGAATGATATTACTGAAGGAGAAAAAACACAAGAGGACACCAGATGTCAACACTCACATTTAGAGTTTACTTCACTCCTGTGCCTTGAGCAAGTGGGACTCAAGTGACGTACAATACCTTCTCAACACAGTTCTCTTTGGCCTTTGCTCTTCATAAACCCATTGGCCAACATCAGCTTTTCCATTCAACCAAATCCCGAATCTCATGTCATTTCTGGCTTAAGGAGTTACTTCAGCTCCCACTCCACTACCACTCCTTTCATTCCCAGCTCATAAACCCCATTGCTCCAGTTCCATAAACTGCCATCGTTCCAGCATTTCACATCCATCCCCATGGCGGAAATAGCAATCATTACACCGTGTCTGGAATTCTTTTCATTTGAAGAACCCAGGTTGGTAGACAAATACCAGATTAATGGACTTGACAAGTTTGTCATTATGTTGGTTTTCCATAGCCATCTCTGTCTATTGTATTTCACATGGATGAAGGAAttggtttgtgaaatattgtGAGTGTTATTCAACTGTTCAGCTCTGGTCGTATACTGCGAAACCTAATTTGTTTATCCATTATGATTGTTGGAAAAAGTGTTCAAGACAAGAAAGCTGTTCCCTTGTACTGTAATAAAAAGTGAATCATTATTATTCAGGATAAAACTGATCCCATGACTTAGTTTATTTGATGATTAGAACCTCCTGGCCCATTGCTAGAGAAAAGATTCCAAGGAGAAAAATGACACTAATAATAGCATCAgtgaagagaaacagagcatAGGCAGGATATACTTAAGAAGACAGTTATTGAAGAATATCCGTTCATCAGGCTACAGTCAGATGTTTTAAGTTTTGTACAGTGGGAATTCCCTTGAGTGTCTCCATGATACTAATGGGGGATTGTAGTTGCAGTCATAAACTTTCTTTAACATTGTCATTTGcagaacaaatgtttttttttgaatgtgtaTTCAAAGAATGTCGCAATATCCTCACTGAAAGGTCTTTCTGTGAACTCGGAGGTTAACTGGCAAATAATTCCTCCCTTTGTTTTTGAAAAGGAAAGGTGTGCCTTGTAAAAGACTTTGGGGAAAACAATATGCTATGATGGTGTTTTCAACAATACAGAATGCTTTTGCTGTATGCTATAGTGCATCTCAGTTAATTTGGACACTGCTTAAGTGGAAAGAATTGTAGGGACCAGGTGTGGTAGAGAGTCATGTGTAACAGATAACCGGGAGTTAATATGAGGAGATTATGTAGATCAGTAAATTACGGGGAagtgtttacaaaaaaacagctgtggTATGAAATTAAGGGATGAGTGAAGGATATTAAGCAGTCATAGGTAATGATCTTAAAACATAGCTTGGTGGCTGCGTAATCATCACTGAAAGATTGGGGGTCTTATAAGTATTTGATATTAGTCTAACAATCTCTTGTATCTGTGCCATGGGAGATGACGTAGAGTAGCTGCCAGACAGTAAACATGACATGGTGATCTTTCCTGTGTGTTAATGGCCCTGTTCAGTGTGGAATTATCAGCTGTGGCGAAACGCTATTCCACTCAGGTCATGACTTGGCCTACATTCTCCACAGGCAGACAAGGTGAGATAAAAAAAGATCGAGGGGAATACAAAGCTGCAGAGAGCTGAGCAATTTCATTGAGGAAAAAACAGCGTGGAAGGAATCTGCTGTGTGCTTGGAATGCAGAAAGATTAGTAGTCAGGCATCTATATGtagctctccctctctctggttctgtctctctctctctccttgatATGCAGCCACCCATTCGTGCCCTCCACACATCCCAGCCGTATATTCGTTCATTCAGCTATGGCTTTGCAAATGCACTCTTGAGCTGTATATTCATACTGTAGGCCAAGATACCAAGTTGTTAATGACTGTTTTGTTTTCAAACCCTGCTTTAGTACAATGAGGAAAGTGATTGTTGTGTATGACTTGTTTATTCTGCtgcttgaaaagaaaaaaaaaaggaaaatctaCCTCTTTTTCTCTGGGGGTATACTTTATTAGATTGGCCTTTAGTGTGCCTATGCACTGCAGAATATTGACCGTTACTAGCTGGAGGTGAATATATGCCAATCTGTGATCTGTAATGTATTTAGCTATGTAAATACCa
>XM_026916082.2
GAACGGCTGCAGGGAGCCCTGAAAAAGCATGAGTGAGACACAGCTTTTGAATGGTTAACTCCCACCCTCCCTTCCTCTTTCCAGCTCTCCTTTTGATCCCCATTCCTCTGCTCTTGTATTCAACGTCACATTGTGGCTTCAGCCAATCACTTCCACTGTCCAGCCCCTTCACTGCTTCTTTACTCCACCCCCTGCCTTTGGCACATTATATACCCACACGCAGTTCAGCTGGGAGAGTGTTCAACATGCTGCTGGTGATTCACAGTGCAGACTATTGTAAgacagcagagaaagagaggatgaCTGCGCAGGGACTTCGGACCTTTTTTTGCTGGTCATGTTCATCTTGCACATAGTTTCACATCGCCCTGTTTGGATCTAGGCTTCATCTCTTCTCAAACCAGTACTGGATTTGGAGTACAGTAGAGGAAGTTTCCACCTGGCCTCCAACAGACTCACTggcttttaatttttaagatgGGCTGTACCACGGGGCACCTGGCATGCCAGCCCCAGCCTTTTTCAAGCCCCAACCAGGAGGGACAGATTCAGGAGGGGGCAGCCAAAGTCCCAGAGGTCCTGTCCTCTTTAGAGAGGCTTTCTCAGGCCACAGGGGGCATGGAGAAATCCTGGTATCGCTGCATCTTTCCCTTCGGAATCATCTCACTGGTGATTGGTATAGCTGGCACAGGCGTGACCTGCACCTACAATGACCTCCCTCAGACCAAGGTGGTGTCAGTCGTCTTGCTGATTGCTGGGCTCGTCCTGGTGGTAATGGCTACTGCCTGTTGGACAGTACATAAGAAGAAAcgcaggaaaaagaaagagggaggcCCCTTTACCACTGAACAGTGTCCCCTGTGAGGAGAGACTAGAAGGAGGAAGACACTTTTGAATGAACACGGGGAGTTGTGATGCCACCTTTGTTTAGCATTTCTTTTTGCCAAACTTCAGTCCATGTGTTCACTCAGGTAGCAGCAGTGTGAACATGCAAATAGGACAGATGGACAGTGTATTCAGGACACCCCTAGGGAGCAACAGAACCCACTGGACAAGTATGAGGGTTCATACAGATGGTTTACTGCCACTCAGCAAGTGTCTAGTGTCAAAACAACTCCAGAGCCACATGCACATTTGAGACACTTAACGCTTGGACCGTAATACCAAGCCACTGCTGGAGTCAGTGCTGCCGTCAACACAGCCGTCAGTCCCCCGCATTCCTGCTCTTGGGGCCAAATGGCTCCCCAAGGCTAGCAAAGAAGTGATCCAGAGAGGGCAACCAGACACCGCGACGAAAAGCAGAAGTGCAACCCCGTAATCGTCGCACGTCATTCTCCTGTCCTGTGACACTACAGCAATGTGTGAGCTTTTTTACGCAATGGGAGAGTGGAACCTGAGCTGAGCCTCAGCTAGTCCTTACTGGCGAGAGAGGGCATGAGCAGGAAAcgctgcctgtgtgtgtgcgtgcctgtgtgtgtgtgtgtgtgtgtgctgcaggaaGATGGAGAACAGCAAGCATGGTGCATGGTATTCCACTTCATTCTCTGTCTGAGTTTTCCGATGTCAGGCCGGGTGCAGTGTTAGCATATAGAGCAATGACCATGTTCCTGGAAGCCTACCTTCTTACCTAATTCGGTTCCTGTCTGCAATCAATAGAGCTGATCTGGCTAGGCAAGTAGATTGATTACCTCTAGCACATGTGTTGAGTTAGAGGTGGAACTGAATTCTATAGGAAGGTGTGCTCCTAGGACCACCAGAAGCAGTTTAGGTGAGGTTTAATCTAGAGGATTTTTAGCATTCACTGTAACTATGTGCCTCTGATCATTCTCAGGCCCTTGCAAAGCAGCATTTGAGGAAAATATACACGGAAAAGGTTTAAATATCAAACCAAAGCCCTTTTGTTTTGGGCTAGTTGGTGAAAAGGAAATCTTGTCTTCAGAGATAAGACTTCATTTCCCTGCTTCACAGAGAATGATATTACTGAAGGAGAAAAAACACAAGAGGACACCAGATGTCAACACTCACATTTAGAGTTTACTTCACTCCTGTGCCTTGAGCAAGTGGGACTCAAGTGACGTACAATACCTTCTCAACACAGTTCTCTTTGGCCTTTGCTCTTCATAAACCCATTGGCCAACATCAGCTTTTCCATTCAACCAAATCCCGAATCTCATGTCATTTCTGGCTTAAGGAGTTACTTCAGCTCCCACTCCACTACCACTCCTTTCATTCCCAGCTCATAAACCCCATTGCTCCAGTTCCATAAACTGCCATCGTTCCAGCATTTCACATCCATCCCCATGGCGGAAATAGCAATCATTACACCGTGTCTGGAATTCTTTTCATTTGAAGAACCCAGGTTGGTAGACAAATACCAGATTAATGGACTTGACAAGTTTGTCATTATGTTGGTTTTCCATAGCCATCTCTGTCTATTGTATTTCACATGGATGAAGGAAttggtttgtgaaatattgtGAGTGTTATTCAACTGTTCAGCTCTGGTCGTATACTGCGAAACCTAATTTGTTTATCCATTATGATTGTTGGAAAAAGTGTTCAAGACAAGAAAGCTGTTCCCTTGTACTGTAATAAAAAGTGAATCATTATTATTCAGGATAAAACTGATCCCATGACTTAGTTTATTTGATGATTAGAACCTCCTGGCCCATTGCTAGAGAAAAGATTCCAAGGAGAAAAATGACACTAATAATAGCATCAgtgaagagaaacagagcatAGGCAGGATATACTTAAGAAGACAGTTATTGAAGAATATCCGTTCATCAGGCTACAGTCAGATGTTTTAAGTTTTGTACAGTGGGAATTCCCTTGAGTGTCTCCATGATACTAATGGGGGATTGTAGTTGCAGTCATAAACTTTCTTTAACATTGTCATTTGcagaacaaatgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251514 True 3440 lncRNA 0.43 1 16761232 16764671
XM_026916082.2 False 2916 mRNA 0.46 1 16762426 16765341

Neighbor

gene id symbol gene type direction distance location
ccnf ccnf,LOC103461596,LOC107683020 coding downstream 9164 16737941 ~ 16752068 (-)
abca3b abca3,abca3b,LOC107742093 coding downstream 24475 16691510 ~ 16736757 (-)
LOC117595684 NA coding downstream 72633 16671145 ~ 16688599 (-)
LOC113528100 LOC108276786,LOC108438908 coding downstream 83398 16671145 ~ 16677834 (-)
LOC113528041 LOC108276772 coding downstream 126495 16615091 ~ 16634737 (-)
LOC113527928 LOC108259859 coding upstream 4957 16770298 ~ 16779653 (-)
dnaja3a dnaja3,LOC108431932 coding upstream 54899 16820240 ~ 16829084 (-)
vasnb LOC108276517 coding upstream 144572 16909913 ~ 16931628 (-)
glis2b LOC108276531 coding upstream 209380 16974721 ~ 17038944 (-)
crebbpb LOC108279275,LOC107661648,LOC107553628 coding upstream 415655 17180996 ~ 17277356 (-)
G212395 NA non-coding downstream 70895 16681184 ~ 16690337 (-)
G212319 NA non-coding downstream 264000 16478891 ~ 16497232 (-)
LOC113528275 NA non-coding downstream 305385 16453560 ~ 16455847 (-)
G212018 NA non-coding downstream 720833 16039756 ~ 16040399 (-)
G212016 NA non-coding downstream 723915 16037116 ~ 16037317 (-)
G212463 NA non-coding upstream 66627 16831968 ~ 16832219 (-)
G212626 NA non-coding upstream 413187 17178528 ~ 17179748 (-)
G212637 NA non-coding upstream 519159 17284500 ~ 17284707 (-)
G212643 NA non-coding upstream 527019 17292360 ~ 17292723 (-)
G212654 NA non-coding upstream 575246 17340587 ~ 17342051 (-)
LOC113528039 LOC108276772 other downstream 162544 16572545 ~ 16598688 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other downstream 557241 16151075 ~ 16203991 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 1775120 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 2071100 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 2240257 14520277 ~ 14520975 (-)
LOC113528519 NA other upstream 527432 17292773 ~ 17319719 (-)
G212700 NA other upstream 620870 17386211 ~ 17425901 (-)
LOC113528038 caskin2 other upstream 624845 17390186 ~ 17518527 (-)
G212750 LOC100136012,LOC107575789 other upstream 909486 17674827 ~ 17675284 (-)
tsen54 tsen54 other upstream 1046272 17811613 ~ 17872581 (-)

Expression


Co-expression Network