G212395


Basic Information

Item Value
gene id G212395
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16681184 ~ 16690337 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU251546
AAAAGCTTACATGTTTGCAAAGTGGGAGTCTGTATAAAATCAGCTATTGTAACATAGGTGAGGTGTTTATAGGAAACATTGCAGTTGCTCCACTTAACAGGACTGGAGTAAAGGTAAAATCCAGATTGACTGACAGCTCTTGTGCAGTGCTGTATCAGCTTTCACACATTCCCTACTTGCAATCTACTTACAGgccattaaaattaaacattatacaaGAGGCCAGTTCAAACTGTGGCAGAGTTTacagaaatgaaacaataaaaagactatgaaagtaaataaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251546 True 290 lncRNA 0.36 2 16681184 16690337

Neighbor

gene id symbol gene type direction distance location
LOC113528100 LOC108276786,LOC108438908 coding downstream 3350 16671145 ~ 16677834 (-)
LOC113528041 LOC108276772 coding downstream 46447 16615091 ~ 16634737 (-)
LOC113527963 rnps1,LOC108411755,LOC107553655,LOC103909923,LOC107673212 coding downstream 135544 16538381 ~ 16545640 (-)
LOC113528411 adap1,LOC108276756,LOC106601846,LOC103363436 coding downstream 143930 16501121 ~ 16537254 (-)
sox8a sox8 coding downstream 350645 16326885 ~ 16330539 (-)
abca3b abca3,abca3b,LOC107742093 coding upstream 1173 16691510 ~ 16736757 (-)
ccnf ccnf,LOC103461596,LOC107683020 coding upstream 47604 16737941 ~ 16752068 (-)
LOC113527928 LOC108259859 coding upstream 79961 16770298 ~ 16779653 (-)
dnaja3a dnaja3,LOC108431932 coding upstream 129903 16820240 ~ 16829084 (-)
vasnb LOC108276517 coding upstream 219576 16909913 ~ 16931628 (-)
G212319 NA non-coding downstream 183952 16478891 ~ 16497232 (-)
LOC113528275 NA non-coding downstream 225337 16453560 ~ 16455847 (-)
G212018 NA non-coding downstream 640785 16039756 ~ 16040399 (-)
G212016 NA non-coding downstream 643867 16037116 ~ 16037317 (-)
G211935 NA non-coding downstream 712409 15892024 ~ 15968775 (-)
G212463 NA non-coding upstream 141631 16831968 ~ 16832219 (-)
G212626 NA non-coding upstream 488191 17178528 ~ 17179748 (-)
G212637 NA non-coding upstream 594163 17284500 ~ 17284707 (-)
G212643 NA non-coding upstream 602023 17292360 ~ 17292723 (-)
G212654 NA non-coding upstream 650250 17340587 ~ 17342051 (-)
LOC113528039 LOC108276772 other downstream 82496 16572545 ~ 16598688 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other downstream 477193 16151075 ~ 16203991 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 1695072 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 1991052 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 2160209 14520277 ~ 14520975 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 70895 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 602436 17292773 ~ 17319719 (-)
G212700 NA other upstream 695874 17386211 ~ 17425901 (-)
LOC113528038 caskin2 other upstream 699849 17390186 ~ 17518527 (-)
G212750 LOC100136012,LOC107575789 other upstream 984490 17674827 ~ 17675284 (-)

Expression


Co-expression Network