G212445 (LOC108276517)


Basic Information

Item Value
gene id G212445
gene name LOC108276517
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16842948 ~ 16914573 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU251601
cttttatggtgtgtatatacagtagatataaaaaagtctacacacccctgttcaaatggcaggtttttgtgatgtaaaaaaaatgaaaccaagataaatcatgtcagaactttttccaccctcattgtgaaattacaacatataaaaagtaagtgaaaaacaatcagaaacattttagggaaaataggaaaaataaagaagttataataacctagttgcataagtgtgcacacccctaaactaatatgttgttgaagcaccttttTGTTGAAGTGTAAAAACAAATAGCTGTTCCCATGCCAATCTTCTATAACAAACAAGTTTTATAAAAAAGGATTATTGTAGTTCAGCAGAATTAATGAACCAAACCTGATCATTTGAGGTCTGTCATTATTCACCTTCAGGCCATTGCTTGTATTTTGTAGACAAATGAATTGTCTTATAGCACATTAGTATACTTTTGGAATAAATATTTACTCTGTAATAATTTTCTGTGGAATTTATGGAAGATAATTTGGAAGACTTTCGTAGTTACAATGGATTCTTTGAAAGTTTGAGCCTGAGCATTGAGCTTGGAACAGAGCCAGAATGCCTGGACTCTTAAATTCAGAGAATAATAGGAGCCTTTTATTGAAGGCTTGAGAGGAGAGAGGCACACactttcatacacacatatgcTCAGGTACCTGCCACCATCCACACACAGAGTAGCCAGTGTTCTAGGGGTTGAGGGATCTCCTGTGATTGATATGGTCGCATAACACATGTTGAACTCCAATCACTGCTTCATTCCTGCTCTCACTTTGTCTGTAGTTTTCATTACTACATGATGCTGTTGTCATtattaacgtgtgtgtgtatattcttTGTTTAACATGGTTGTTCTCCTGCAAAACACCACTGGGCTGTTTTATGTGCTTGTGTTAATCTGTGTTTGAACAACAGCTTGCAGCTGGATTGTTGTTCTTTTGCCAATGCTAGAAGgagattttgtgtgtatgtgtgagggcttgtttttatatcttggtggggaccagaATATCTGACAGTTACCACCTGGTGGGGACATTTGGTTTGTTCCCCAGGAGGGAAACTGCCTTTTctttacaaaaactgcagcttttagcAGGTTTTCTTTTGTTAGATTTGGGTGttagtggaaggtcctcacaagaatagtaagacaaacatttctttgtgtgtgtatgtgttaaatTCCAGTAAGCACTCCAGCTAGTCTTCTACCTGTAAAATATCTGGGTGGTCAGTCACAGGCATGTGTGCAGTAACAAACAATATCAGATTGTTCTGTTTTGGTGGAGGGAGATGATTACAGTGAAATTTGTTTATTAGATTTGAAAATGGTATGTTTTCAATCACCTTCTCCTTTTTGCCTCAAGCTTTCTCCATAAAGCAAAAAACACAATACCTTCCTGTCTTGCTCTTAATCCTAAACAGGCTTGTAAAAGTAGGTACAGGGTGGTGCTTTTTACATTCTCTTACATGGCTGCCTGGTACCTCAGGGAAGTAGTTTTCAAACCGCTCTGCACCACAGCTTTGTCACCTCAGAAGATTCAGACATCCTTTCCTGCTCCACCCAAAATAGTAACAGTgacaaaacataataaatacagatgttgttttatagatttttattggtatttatttgcatttttacacagtgctgttgtacaaatatatacactttAAATGACCAGTACACAAATAAAGAGCTTCCCCAAAAAATAGGgaaaaacataaacatgcatattgaaaatatttagaaatattttcaatGTTTCTTACTGTTCACACTTGTTTTCCAGTTTCAATGTTTATACCCACTGACCAGCATAAATTTAAATGACATATCCATCTCAGTCAAATCCTCAATCTGAAACCATGTTCGCATGAGTGTATATTATTTCCAATGTTTAAATTGATCAAGTGAAGAGCTATTGGTTAAACATTAATACAGTTCCTCACTGAGGCAAACCAAAAAATTCGACACATCTTCCTTTCATCTAATTTTTTTGGTTGCAAGTAGTTTTAGAAAGGGATGATATGTGTCTATACTGTCTTTCCATCCAGAATCACCAGTCTCATTCAAGTAATATACTCAGTTACATTAAAATTAGGTACAATTAAGATATTTTGGTGGTTTCtgtgctctaacacacctgttcAACCTGCTAATTAACTAACAGGTTACATCATGAGCAGGAAAATAACTTGATAACTTGATTGTGGTGATTTAACAACTGTGGTGCCATTtacttttagttttatttatttatatattttttgtaaccCTTAAAAATGTTGTACTTGTTAACTAATGTCAGTCAACAGTttcaattttacattttgttgctGACCAGGGTTGTGTTTTTAGCATAGAACTAGCAAATAGACAAAATGTGGTTAAGTAGCTTGCATGCTAATGACATGGGGACATTTAATGACATTCTAATGACATTCTAATGATGTAATTTGGGTCACATGGTTGTGTGTTTAAAGATATCTCCTGagtcaatataataatatcatttgaaaataagagaaaaaaaagcacaaaagaacTTAATTTTCTTCTTACCATGATCCCCAGCAAATGATACAAGTTGTGCATGTGACTtatggaatattccaaatatttcataggggtgaatgtgttaggtaacagggttgagtttacacaaataaaatgtacatttttcacaaCCTAGTATAATGGGCGATTTGTGAAAAAGGTTCAAGCACGAGATGTTAAatgtatttgcatattaatgcaaacataatatgatttttgaagttttaatgattatatttcaaagtGAAAACGCTATACCACTTTACCTATGTTAAAAATGGATTTTACCATtactttttatacatatttgtaaatgtaccATCAGTGGAACACAAATGACACCACAGTCATAGAATTATGCGGCTAATGTCCCTTTTTCTCTTTACTCATTAGTGTAGTGAGATGAAAAGtataaacaaattttttataaacaaacctTTACACCTGTCTGATGCAGATAATAAAATTAATGCACTGATGGGGATTTGAGGAGAATGTTTATCTTTCTAAATTTAGTAACCCTTGTTTCTGGAGATCCACTTTGGGGGAAGGAGACTAAAATCTAGGCTCAAATATAAGAGGGGCTTTTGTTAGTTTCATGTCTACCCTGACTTTTAGCTACTTAAACTGTCTGACTGTCTTTGCAGAAACAATCCTTTGACTGACTTGTTGGTACAAGCATGTTTAAATCTTCTAAGATTTTGGGATTTTGTTGTCTGCTTTTTAGTCACAAGAGGTAAAGGAAGAAGAGCttgtatttatatacagaaaacacacactaaccaaacagtaatatacataaaaatgcataaaagtgTTGACTTCATATCTCACAATCAAAAGCAACACAATTATCAGTCTTTAAGTAACTAAAGAAGTCCTCATCTTCATTTTCGAGGTACAACTGCTCTTGAGTTCCACGTGTGGGCTTCTCAGCAAAATATTGCCTAAATGGTTCAACCATCAATTTCTGCTACATTTTTTGccaaaaatacaatttttttggttttgattgAAGACACTTAAACAGGCAGCATTTCCCTCAATCTGTGTCTTTTGTTTCTTCTGCTGAAACTGTGACAAGATACATAGAATTCAAGCTTTAGTTTGCTTTAAAATAGCCCCAAGTATCAAACTCAGGATGGCTTTACGGTGTTCATGTTGTTTGCAACACAGCAATCTTGTATGAGTGGCATCTCATAGTCCAAGTAATCTTTCTGCACTGCTGATTGAGAGGACATTATGTCTGGCTGCTTTTGGGGCAGTGCTCCATTGTCCAAACCTACTTTAACACCCTCCAATTCCAATTGTGATGGGTCACAATACAGGTGTaattgtgctcttttttttctgtgcatgtaACAGGCTACACCAACAGCAACAGCCACCAGCACTAACAGGAGAAGAATAGCCAATGCTGGCACAAGCATTGTTGTAAGCTGTGGATCCTCTACTTGTGCACTGGTGTGCTGCTGGTTTAATGTCTGAGCCTCTGTGCATACACTGTCTACATCACTGGGCTCATCCAGTGGACTGGCACAGATGGAATATGTAGAATTAGGAAGCAGTCCACGCAGTGTGTAGCCTGGATAAGAGGCTGGAATGTTGAGTTGCTGTGGGCGTTTATCTGATCCTGAGAGGTTTCTATAAGTTAGTTTGACACCACGGATATATGGACGCCTCTCAATGTAGCGATAAAATTCCAGCAGTATAGATGAGCTTGTTACCGTTTGTGCAAAGATTTCAGACATCACACTGACTGTTGCTGTAGGGACATTTTCAGGTAGAGCCAAATCCTCCCTATTCTCACAATATTTCCCTGAAGTCCCATGAGGACAAGTGCACTCAAAGTGACCCTGATGATCCAGCCAACATGTACCTCCATTTAGGCAGATATTGGATGGACAGAAATTCATGTTCAGATCTGAGCCTGTGCTGCTGCTTGGGGAAGCTGGGACTGGAGGTAGAGGATGAATGTCTCTCTCTGAAGAAGTTTTATCGCTGGGTTTAAGAGGGGGAATGGCACGTGTCGTGCTATGCAAAGTGGTGATCAGAGGTGGAGCCAGCGTGGTGGTCTTAGCTGGACTGATAGTAGTCCTTGTAGGGCATCCAAAGTCATGATGTCGTAGCCTTTCAAGCACCTTTCCTGCATTTCGGGGTGGAAAATGACAGCGGGTCTCCTCTGTCCTTCCCAGCAATATCTGTTTATTACGCAGCCAGCTGGGAAACCAGGCCAGTGTGCAGAGGCAGTTAAAGGGATTCTCTGCAACAGTAAGTTTTTTCATGTGAGGGAAGAGCAGGGTCATATTATCAGGCAAGCTCTGCAGGCTGAGGTTGCTGATGTCCAAATCCTGAAGCTCAGTCAGGTTCTCAAAATGTTCCCACTTTAAAGGACCCATGGGATTGCCAGCTAAACTGAGTCTGACCAAGCCCCTTGCCTCCCACAGCACTCGAGGAAAAACCTTTAGTTGATTGTTAGAAATGTCCAGCTCATGCAGGTTCTTGAAGCTACCCAAGAGTTCCTGATTCAGGGTGCTCAGCCCTAATCCACCCAACTTAAGTGATTCTAATTTGGGTGTCTGAAGGTCAGCTGGCCCTGGTGAAGGGATTTTATTGAACCGCAGATCCAGTAGAAGCAGATGAGGCATTTTAAGAGCAGGTACTGTTGTCAGCTCATTTCTGTACAGCTTTAACTCAAGTAACtgctccagaccatcaaagGCTGCAGGGTGTATGTTCTTAATGCTGTTGCTGTGAAGATACAGCCTTTCCAGCAACTCCAGTCCAGCAAAACTCTCCTGAGAAATATGGGTGATTTGGTTAGATGAAAGATCCAGGTTACGTAAGGAAGATAGTGGCTCAAACACACGATCTGGCAGTTCATTCAGCTTGTTCTGACTTAGATCCAGCATCTCAAGCCTTTCCAACCTAATAAAATCTTCCTGGTCTAGGGTTTCAATGCCATTCTTGAAGACATACAGGTTTTTTGTTGATGCAGGTACATCAGAAGGCATGGTTGTGGCCTGGCGTGTATAACAGAGAATGGAGTCTGGACTTGAACAGGAACAGTCTTTTGGACAGTTACTGGCCAATGCCCAGGATGCCAACTGCAGATAGAGGAGCAGGGGTAGTAGTAGATGGAGGAAGGGCTTCATGGTGTTGCTGACACCCTAAAAAGAGAAACGCAAGATCATGTTAATGAccaagtaataaataaatattaggatGCAATGTGACCCTTTAAAGCAATATGAAAACGGAAATGTACAATATGAAAAAGAACACTACATTATTtcaaaaaaggttcctcaaTGGTTCTTTAGATAGGCTTCTTTCATAAAGGGATTTTACATTACCCTCTCTTATACAGAAACACTTTCTTTTCCATTCCTCCATAACACTACTCCACATTTTGTACTTGAGACTTCTCTGAAGATAAATTGTTGTTTTGGCAAATTGTCATACAAAAACCAACTGAACTGACTCCTACTcactaaaaaactaaaatctggCATGTTTTAAGACATGTAAAGCA

Function

NR:

description
caspase-7 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251601 True 6128 lncRNA 0.38 3 16842948 16914573

Neighbor

gene id symbol gene type direction distance location
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding upstream 23680 16808875 ~ 16819268 (+)
cfap70 cfap70 coding upstream 34298 16779776 ~ 16808650 (+)
LOC113527936 LOC108276743 coding upstream 293034 16545641 ~ 16549914 (+)
LOC113528274 rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017 coding upstream 348246 16400754 ~ 16494702 (+)
LOC113528350 LOC108259890 coding upstream 1016027 15822782 ~ 15826921 (+)
LOC113528633 NA coding downstream 81282 16995855 ~ 16997652 (+)
LOC117595691 NA coding downstream 82793 16997366 ~ 16998694 (+)
tfap4 tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667 coding downstream 152664 17067237 ~ 17085755 (+)
trap1 trap1 coding downstream 405169 17319742 ~ 17342075 (+)
ccdc137 NA coding downstream 834601 17749174 ~ 17767669 (+)
G212441 NA non-coding upstream 32198 16810311 ~ 16810750 (+)
G212412 NA non-coding upstream 72820 16769928 ~ 16770128 (+)
G212258 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 non-coding upstream 77856 16761152 ~ 16765092 (+)
G212201 NA non-coding upstream 147158 16676463 ~ 16695790 (+)
G212219 NA non-coding upstream 149549 16691001 ~ 16693399 (+)
G212449 NA non-coding downstream 9232 16923805 ~ 16927369 (+)
G212541 NA non-coding downstream 137805 17052378 ~ 17055807 (+)
G212571 NA non-coding downstream 265221 17179794 ~ 17180253 (+)
LOC117598773 NA non-coding downstream 362081 17276654 ~ 17285842 (+)
G212582 NA non-coding downstream 369710 17284283 ~ 17284486 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 696622 16140330 ~ 16146326 (+)
G211913 NA other upstream 874189 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 1851498 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 2221160 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 3349006 13464085 ~ 13493942 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 172711 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 784100 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 1269120 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 1495268 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 1510606 18425179 ~ 18434528 (+)

Expression


Co-expression Network