G212541


Basic Information

Item Value
gene id G212541
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17052378 ~ 17055807 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU251703
GGGCAGCGACTCACACCCATGAGCCTCGCTTCTTGCAAGACATGAGGTGTGCTGCTCTTGCAAGGACCGTGTTACAGCAAGGCAAAATGCGAACTCATCAAGCTAGTTGAACAAATCTAAGATAAAGGAGAAATGGGAGGCTGAAGTGAAGACAATTATTTCTTCTGAAACCTGGGAGGAGGCATGTGGGGAGGCACATCTAGTGACCAGCTCTAATATCTGGAGGAAGTTCAAATGGAAGATAACAACAAGACATTTCCGGACTCCacaaataacagcaaaatgaaaTCCGACCAGTTCAGACAAGAGCTGGAGAGAATGTGGACAGCAAGTTTGTAATCACACCCATATTCTGTGGTCAAgagaaattattattgttaagaAATTATTGGAAGGAATATTTAATGCtcttaaaaaaatcttccacCATGAGATTCCCAAAGATTCCCAAGAAGTCCTTCTTGGAGTGCATCCAGAAGGCTTCGAGGGTAGAGCTAAAATATATTTGCTGCAAACCTGCTACCAGCCACTATTAAGTGTATCACATTCAGGTGGTTAAAACCTGGCCCTCCATCATACAGTGATTGGATCCAAAAAATGTAGGAGCTGTACAAAGTGGAACAAATCACATATGCACCACAGCTTCAGAGGCCAACATCTTTAAAGAGATGGACCCCTGTAATGCCTTTATTAATAACATAATTCAATAAGAAAATTCATACCATGTCATACTTGTTCTAACTACCTCAAAGTCACCTGCCcttctcttatttatttcttttacttattcatttatctattattattattattattattttactttttccattttgtaCCTCCTTTTTCTCTGGGGATTGTATTATCAAATATACATGGACGTTTTCATTTACTGTATAATGTACTT

Function

GO:

id name namespace
GO:1990904 ribonucleoprotein complex cellular_component

KEGG:

id description
ko03010 Ribosome
ko03008 Ribosome biogenesis in eukaryotes
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU251703 True 907 lncRNA 0.38 2 17052378 17055807

Neighbor

gene id symbol gene type direction distance location
LOC117595691 NA coding upstream 53684 16997366 ~ 16998694 (+)
LOC113528633 NA coding upstream 54726 16995855 ~ 16997652 (+)
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding upstream 80611 16832403 ~ 16971767 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding upstream 233110 16808875 ~ 16819268 (+)
cfap70 cfap70 coding upstream 243728 16779776 ~ 16808650 (+)
tfap4 tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667 coding downstream 11430 17067237 ~ 17085755 (+)
trap1 trap1 coding downstream 263935 17319742 ~ 17342075 (+)
ccdc137 NA coding downstream 693367 17749174 ~ 17767669 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding downstream 752465 17808272 ~ 17810490 (+)
mfsd11 mfsd11,mfs11 coding downstream 965278 18021085 ~ 18043102 (+)
G212446 NA non-coding upstream 124396 16869758 ~ 16927982 (+)
G212449 NA non-coding upstream 125009 16923805 ~ 16927369 (+)
G212445 LOC108276517 non-coding upstream 137805 16842948 ~ 16914573 (+)
G212441 NA non-coding upstream 241628 16810311 ~ 16810750 (+)
G212412 NA non-coding upstream 282250 16769928 ~ 16770128 (+)
G212571 NA non-coding downstream 123987 17179794 ~ 17180253 (+)
LOC117598773 NA non-coding downstream 220847 17276654 ~ 17285842 (+)
G212582 NA non-coding downstream 228476 17284283 ~ 17284486 (+)
G212589 NA non-coding downstream 240601 17296408 ~ 17296874 (+)
G212662 NA non-coding downstream 329157 17384964 ~ 17385177 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 906052 16140330 ~ 16146326 (+)
G211913 NA other upstream 1083619 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 2060928 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 2430590 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 3558436 13464085 ~ 13493942 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 31477 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 642866 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 1127886 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 1354034 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 1369372 18425179 ~ 18434528 (+)

Expression


Co-expression Network