G212589


Basic Information

Item Value
gene id G212589
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17296408 ~ 17296874 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU251790
ctgctgttcttcagaaaaatcctgccggggggtgaaaacttttgaacagaatggagatgtgtacatttttcttattttgcctaaatatcgtattttttcatttagtactgcccttcagaggttacatgtttcccagaagacaaaatacattaaatttaccctgatcttcaaattcaaaaagttttcacccccggctcttaatgcatggtttttccttctggagcatctgtgagcatTTGAACCTTCAGttatagttgcatatgagtccctcagttgtcctcagtgtgaaaagatggatctcaaaatcatacagtcattgttggaaagggttcaaatacacaaaaaatgctggaaaaccaaagaatttgtgggacctgaaggatttttctgaagaacagcaggcagtttaactgttcaagacaaacaagggactattgaacaactatcagtaaacaaaaaaacacagc

Function

NR:

description
PREDICTED: cullin-4B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251790 True 467 lncRNA 0.37 1 17296408 17296874

Neighbor

gene id symbol gene type direction distance location
tfap4 tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667 coding upstream 210653 17067237 ~ 17085755 (+)
LOC117595691 NA coding upstream 297714 16997366 ~ 16998694 (+)
LOC113528633 NA coding upstream 298756 16995855 ~ 16997652 (+)
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding upstream 324641 16832403 ~ 16971767 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding upstream 477140 16808875 ~ 16819268 (+)
trap1 trap1 coding downstream 22868 17319742 ~ 17342075 (+)
ccdc137 NA coding downstream 452300 17749174 ~ 17767669 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding downstream 511398 17808272 ~ 17810490 (+)
mfsd11 mfsd11,mfs11 coding downstream 724211 18021085 ~ 18043102 (+)
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding downstream 765163 18062037 ~ 18063661 (+)
LOC117598773 NA non-coding upstream 10566 17276654 ~ 17285842 (+)
G212582 NA non-coding upstream 11922 17284283 ~ 17284486 (+)
G212571 NA non-coding upstream 116155 17179794 ~ 17180253 (+)
G212541 NA non-coding upstream 240601 17052378 ~ 17055807 (+)
G212446 NA non-coding upstream 368426 16869758 ~ 16927982 (+)
G212662 NA non-coding downstream 88090 17384964 ~ 17385177 (+)
G212728 NA non-coding downstream 365081 17661955 ~ 17662194 (+)
G212729 NA non-coding downstream 366861 17663735 ~ 17663960 (+)
G212722 NA non-coding downstream 395217 17692091 ~ 17694083 (+)
G212723 NA non-coding downstream 436256 17733130 ~ 17734044 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 183252 17087284 ~ 17113156 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 1150082 16140330 ~ 16146326 (+)
G211913 NA other upstream 1327649 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 2304958 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 2674620 14619204 ~ 14621788 (+)
cenpx cenpx other downstream 401799 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 886819 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 1112967 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 1128305 18425179 ~ 18434528 (+)
smim22 NA other downstream 1617852 18914726 ~ 18919942 (+)

Expression


Co-expression Network