G212783


Basic Information

Item Value
gene id G212783
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17781712 ~ 17781928 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252045
GACGGGAACCGTTTTAAGCTGGTTTAGTTCGTATTTAAAGGACCGGAGGCTCTCAGTTCGACTAGGCACCCACATGTCACCAGCTGCTAACCTCCCATGGGGGGTCCCGCAGGGATCAATACTTGCTCCAACACTTTTTTCCCTGTATATGCTCCCTTTGGGCTCCATCTTTAGGAAACATGGTGTATCATTTCACTGCTACGCTGATGATACCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252045 True 217 lncRNA 0.50 1 17781712 17781928

Neighbor

gene id symbol gene type direction distance location
ccdc137 NA coding upstream 14043 17749174 ~ 17767669 (+)
trap1 trap1 coding upstream 439637 17319742 ~ 17342075 (+)
tfap4 tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667 coding upstream 695957 17067237 ~ 17085755 (+)
LOC117595691 NA coding upstream 783018 16997366 ~ 16998694 (+)
LOC113528633 NA coding upstream 784060 16995855 ~ 16997652 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding downstream 26344 17808272 ~ 17810490 (+)
mfsd11 mfsd11,mfs11 coding downstream 239157 18021085 ~ 18043102 (+)
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding downstream 280109 18062037 ~ 18063661 (+)
tac4 NA coding downstream 578853 18360781 ~ 18368589 (+)
LOC113528424 NA coding downstream 667358 18449286 ~ 18451161 (+)
G212782 NA non-coding upstream 256 17781231 ~ 17781456 (+)
G212781 NA non-coding upstream 685 17780780 ~ 17781027 (+)
G212778 NA non-coding upstream 2531 17778915 ~ 17779181 (+)
G212765 NA non-coding upstream 36728 17744710 ~ 17744984 (+)
G212723 NA non-coding upstream 47668 17733130 ~ 17734044 (+)
G212804 NA non-coding downstream 37490 17819418 ~ 17826350 (+)
G212870 NA non-coding downstream 104081 17886009 ~ 17886282 (+)
G212889 NA non-coding downstream 116853 17898781 ~ 17898981 (+)
G212903 NA non-coding downstream 182865 17964793 ~ 18464023 (+)
G212899 NA non-coding downstream 199070 17980998 ~ 17982806 (+)
cenpx cenpx other upstream 48706 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 668556 17087284 ~ 17113156 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 1635386 16140330 ~ 16146326 (+)
G211913 NA other upstream 1812953 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 2790262 14988086 ~ 14991450 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 401765 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 627913 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 643251 18425179 ~ 18434528 (+)
smim22 NA other downstream 1132798 18914726 ~ 18919942 (+)
G213491 NA other downstream 1362146 19144074 ~ 19145240 (+)

Expression


Co-expression Network