G212818


Basic Information

Item Value
gene id G212818
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17869886 ~ 17870652 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252085
ttttaaatattaagctATTTTGGTTTacctgtttatttctcttttaaatcAACATAGGCCTACTTTAGAATCATGAAATTAGTATTAGGCTACTTTCTTACTGGCAAATTTTAGGCTATTTCAACCTCAACCCTTGAGCTATAGTCAACATCTCGACATCAATACGGCTGGAAAGTAACACTTCAAAATGCAATATCAAATCCAGTCACAATTCAATAATTCAACATGTAACATACAACATTGTAGTGAATGAAGTCACAATCATCAAAATTTTAAGGTTCTATTCAATCAGTCCGTTAGCAGGGAGTACACGGTAGCCTTGCTAGCGACAGCGCCAGGCACTCCATACAGTGTTCACATGATCCAAGGGAAAATTCAGTTTAGGTGAGGACACGCTTACCGCGATGCGGAGATTCACTGTCAGCTCAACGAAAGTCGGTAAGCAATCGGCTTACTGTTCAGAGTCCACGCTCTCAATAAGCAGAAGATTTCTCCCAATGTAACTCACGGTCTAGGTTCTTCAAGCGGGTGGCTCGCCATCGAACATCCACGTCCATGTGCTCGACGCATGGGCTTCAGCAGTTCGCGATTCTTCCCGGAAAATTAGTCAGCTTAAcaagaaaatgttcaaaatctATCAACATAGACAGAAcgctaaataaaacacttcaaaacacaaaataattatCAGCAATACtctatgtttctttctttcaatttgCTCAAGGATTTAACACGCCATGCAACCCTTCATCTCTCGTTTTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252085 True 767 lncRNA 0.40 1 17869886 17870652

Neighbor

gene id symbol gene type direction distance location
crebbpb LOC108279275,LOC107661648,LOC107553628 coding downstream 592530 17180996 ~ 17277356 (-)
glis2b LOC108276531 coding downstream 830942 16974721 ~ 17038944 (-)
vasnb LOC108276517 coding downstream 938258 16909913 ~ 16931628 (-)
dnaja3a dnaja3,LOC108431932 coding downstream 1040802 16820240 ~ 16829084 (-)
LOC113527928 LOC108259859 coding downstream 1090233 16770298 ~ 16779653 (-)
foxj1a LOC108274501,LOC108274674,LOC108263299 coding upstream 60057 17930709 ~ 17934416 (-)
jmjd6 jmjd6,LOC107748872,LOC107565873 coding upstream 110361 17981013 ~ 17985888 (-)
LOC113528252 dnaaf5 coding upstream 230789 18101441 ~ 18161879 (-)
LOC117598994 LOC101884462,LOC107081104,LOC101885893 coding upstream 519230 18389882 ~ 18394978 (-)
LOC117598995 LOC108191637 coding upstream 705952 18576604 ~ 18577377 (-)
G212843 NA non-coding downstream 73458 17796226 ~ 17796428 (-)
G212832 NA non-coding downstream 88232 17781346 ~ 17781654 (-)
G212824 NA non-coding downstream 95136 17774534 ~ 17774750 (-)
G212815 NA non-coding downstream 114690 17748428 ~ 17755196 (-)
G212764 NA non-coding downstream 126441 17741796 ~ 17743445 (-)
G212856 NA non-coding upstream 8977 17879629 ~ 17879846 (-)
G212871 NA non-coding upstream 15360 17886012 ~ 17886242 (-)
G212891 NA non-coding upstream 29418 17900070 ~ 17900270 (-)
G213028 NA non-coding upstream 170752 18041404 ~ 18043279 (-)
LOC117599003 NA non-coding upstream 200133 18070785 ~ 18076387 (-)
G212750 LOC100136012,LOC107575789 other downstream 194602 17674827 ~ 17675284 (-)
LOC113528038 caskin2 other downstream 351359 17390186 ~ 17518527 (-)
G212700 NA other downstream 443985 17386211 ~ 17425901 (-)
LOC113528519 NA other downstream 550167 17292773 ~ 17319719 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other downstream 1104545 16761232 ~ 16765341 (-)
mettl23 mettl23 other upstream 180083 18050735 ~ 18054216 (-)
LOC117598999 NA other upstream 505032 18375684 ~ 18377363 (-)
si:dkey-204f11.64 LOC108274053 other upstream 952819 18823471 ~ 18827734 (-)
rbbp6 rbbp6 other upstream 1558565 19429217 ~ 19448559 (-)
lyar lyar other upstream 2069702 19940354 ~ 19984149 (-)

Expression


Co-expression Network