G212889


Basic Information

Item Value
gene id G212889
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17898781 ~ 17898981 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252159
gcttgactaaacaaatatggttttagcctagacttaaacactgagactgtgtctgaggcccaaacactaattggaaggctgttccataactgtggggctttgtaagagataACTCTatcccctgctgtagccttcactattcgaggtaccaataAATAGCCTGttccttttgatcaaagtaggcatggcggatcataaaag

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU252159 True 201 lncRNA 0.42 1 17898781 17898981

Neighbor

gene id symbol gene type direction distance location
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding upstream 88291 17808272 ~ 17810490 (+)
ccdc137 NA coding upstream 131112 17749174 ~ 17767669 (+)
trap1 trap1 coding upstream 556706 17319742 ~ 17342075 (+)
tfap4 tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667 coding upstream 813026 17067237 ~ 17085755 (+)
LOC117595691 NA coding upstream 900087 16997366 ~ 16998694 (+)
mfsd11 mfsd11,mfs11 coding downstream 122104 18021085 ~ 18043102 (+)
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding downstream 163056 18062037 ~ 18063661 (+)
tac4 NA coding downstream 461800 18360781 ~ 18368589 (+)
LOC113528424 NA coding downstream 550305 18449286 ~ 18451161 (+)
sept9a sept9,LOC108411966 coding downstream 573403 18472384 ~ 18558892 (+)
G212870 NA non-coding upstream 12499 17886009 ~ 17886282 (+)
G212804 NA non-coding upstream 72431 17819418 ~ 17826350 (+)
G212783 NA non-coding upstream 116853 17781712 ~ 17781928 (+)
G212782 NA non-coding upstream 117325 17781231 ~ 17781456 (+)
G212781 NA non-coding upstream 117754 17780780 ~ 17781027 (+)
G212903 NA non-coding downstream 65812 17964793 ~ 18464023 (+)
G212899 NA non-coding downstream 82017 17980998 ~ 17982806 (+)
G213191 NA non-coding downstream 618332 18517313 ~ 18565782 (+)
G213192 NA non-coding downstream 631378 18530359 ~ 18534344 (+)
G213221 NA non-coding downstream 807436 18706417 ~ 18713626 (+)
cenpx cenpx other upstream 165775 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 785625 17087284 ~ 17113156 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 1752455 16140330 ~ 16146326 (+)
G211913 NA other upstream 1930022 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 2907331 14988086 ~ 14991450 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 284712 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 510860 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 526198 18425179 ~ 18434528 (+)
smim22 NA other downstream 1015745 18914726 ~ 18919942 (+)
G213491 NA other downstream 1245093 19144074 ~ 19145240 (+)

Expression


Co-expression Network