G212899


Basic Information

Item Value
gene id G212899
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17980998 ~ 17982806 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252169
TTCCTGACAGCATTCTACAAATATGTATcacaaacatttattgacattttaatACCACCTTTAGATTTCCAGGAGGAGGGAGCGTTCGATTCTCAGTACAGAGAAGTGTATTGTAATTGTGTGCATATACACTAGAGATGCAGTACATAGATTAAAAACTGGAGTATTACTCTACTAAAAAGTGAACTtcagaaatataaaatcaaaCGTGAATTCAGTATTCATAAAACCCCTGCAGTAATGCAGCCATATGGGCTGATACATGTTATCAAGCAACAATGTTCATATAGTTACTTTAGTTTATACTGCATCAGGATCCATAAGTGTAAAGCTTGGGCATAACAATACTGAACAACAGTAACAGATCAGTAAGGAGGAAGCCAAAGAAGGCAAAATTACACTTACAAATAAGCCATCTCCAGTATATTAAGTGAGATAGAGTGTGGAAGATGAACACATCACTACCAACACTCATCCCAATATAAGAATTTATCAATAGGGCAAGAAAAAGGATGTACTGTACAGCCTGCCATTATGCAAAGACCACAGACATAATCCTTACGCCAGTATTTCGTGTTCACTCTGTCAAACAAATACCATGTACATATGGACATTCCTTTGTTCGTGTGCCAATTAAGTCATTAGTGATTTATCTGGGAAGCAAaccagagtgagagaaagtgagagatcCCTCTGGTGGAGCAAGGGAGAAGGTCATCGAGAGGAGCTACGCTCTTTGCTCACACAGTCATCTTGGCTTGTGCTATCACCATTTTCCATCATGACACAGGTTCTTCGCTTCTTCCTGCGATGGGTCATGGCATCACCCTCAGAGCCTGATTCAGCCTtgaatcagaatcagaggaactagaggaagaggaggatgaggagtcACTAGAGCTGTCTGAAGCAATGCCTGTGGACTCCTGCAGGTCCACTTTGTCTGCCAGCGCCGCTAAATCTGGCCGCTCCTGTTTTAGAATTCTGAAAAAGattaacttaaaaataatatactgaGTAAAGTTTAATCTATGCTGTGTAGGCTTCTGGAACAGACATGTAAACTTACTCACCTGTACCACTTCCTGGAGAGTTTAGGCCGCCCACGAACAGTCTTGTGCCAAACAATGGGAAAGTTTGTGGTACTTGCGAAGTTCTGAGTGACTGCAATGGTAGTCTCCAAGTTGAGGACAACATGCCACCAGCCACCTAAGGGACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252169 True 1220 lncRNA 0.41 2 17980998 17982806

Neighbor

gene id symbol gene type direction distance location
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding upstream 170508 17808272 ~ 17810490 (+)
ccdc137 NA coding upstream 213329 17749174 ~ 17767669 (+)
trap1 trap1 coding upstream 638923 17319742 ~ 17342075 (+)
tfap4 tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667 coding upstream 895243 17067237 ~ 17085755 (+)
LOC117595691 NA coding upstream 982304 16997366 ~ 16998694 (+)
mfsd11 mfsd11,mfs11 coding downstream 38279 18021085 ~ 18043102 (+)
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding downstream 79231 18062037 ~ 18063661 (+)
tac4 NA coding downstream 377975 18360781 ~ 18368589 (+)
LOC113528424 NA coding downstream 466480 18449286 ~ 18451161 (+)
sept9a sept9,LOC108411966 coding downstream 489578 18472384 ~ 18558892 (+)
G212889 NA non-coding upstream 82017 17898781 ~ 17898981 (+)
G212870 NA non-coding upstream 94716 17886009 ~ 17886282 (+)
G212804 NA non-coding upstream 154648 17819418 ~ 17826350 (+)
G212783 NA non-coding upstream 199070 17781712 ~ 17781928 (+)
G212782 NA non-coding upstream 199542 17781231 ~ 17781456 (+)
G213191 NA non-coding downstream 534507 18517313 ~ 18565782 (+)
G213192 NA non-coding downstream 547553 18530359 ~ 18534344 (+)
G213221 NA non-coding downstream 723611 18706417 ~ 18713626 (+)
G213244 NA non-coding downstream 863410 18846216 ~ 18898291 (+)
G213314 NA non-coding downstream 976224 18959030 ~ 18960740 (+)
cenpx cenpx other upstream 247992 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 867842 17087284 ~ 17113156 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 1834672 16140330 ~ 16146326 (+)
G211913 NA other upstream 2012239 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 2989548 14988086 ~ 14991450 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 200887 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 427035 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 442373 18425179 ~ 18434528 (+)
smim22 NA other downstream 931920 18914726 ~ 18919942 (+)
G213491 NA other downstream 1161268 19144074 ~ 19145240 (+)

Expression


Co-expression Network