G212903


Basic Information

Item Value
gene id G212903
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17964793 ~ 18464023 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252175
TTTGTCATATGTTAATTGTCATTTCTGTATGATCTTCCGTAtgaactatataaataaactgggggcagtcgtggcctaatggttagagagttgacccgaaggtgaacctgaaggtcgtgggttcaagtctcaggtccagcagggattgtaggtggggggagtgaatgaccagcgctctcttccaccctcaataccacgactgaggtgagactcttgagcaaggcaccgaacccccaactgctccccgggcgccgcagcaaaaaaaggctgcccactgctccgggtgtgtgttcactactgtgtgtgtgcacttggatgggttaaatgcagagcacaaattccgagtatgggtcaccatacttggccacaagtcacttcacttcact
>TU252176
ggggcagtcgtggcctaatggatagaggctcggacttgcaacccgaaggtgaacctgaaggttgtgggttcgagtctcgggtccggcagggattgtaggtgggggagtgaatgaccagcgctctctcccaccctcaataccacgactgaggtgagactcttgagcaaggcaccgaacccccaactgctccccgggcgccgcagcaaaaaaaggctgcccactgctccgggtgtgtgttcactactgtgtgtgtgcacttggatgggttaaatgcagagcacaaattccgagtatgggtcaccatacttggccacaagtcacttcacttcact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252175 True 386 lncRNA 0.51 2 18385812 18464023
TU252176 False 332 lncRNA 0.57 2 17964793 18464023

Neighbor

gene id symbol gene type direction distance location
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding upstream 154303 17808272 ~ 17810490 (+)
ccdc137 NA coding upstream 197124 17749174 ~ 17767669 (+)
trap1 trap1 coding upstream 622718 17319742 ~ 17342075 (+)
tfap4 tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667 coding upstream 879038 17067237 ~ 17085755 (+)
LOC117595691 NA coding upstream 966099 16997366 ~ 16998694 (+)
sept9a sept9,LOC108411966 coding downstream 8361 18472384 ~ 18558892 (+)
tnrc6c1 tnrc6c,LOC107724432 coding downstream 169475 18633498 ~ 18697593 (+)
yipf2 yipf2 coding downstream 329281 18793304 ~ 18801817 (+)
clpp clpp,LOC107753176,LOC107590418,LOC107689627 coding downstream 365270 18829293 ~ 18836201 (+)
rgs9a rgs9,rgs9a,LOC108278703,LOC108438013,LOC107590386,LOC107721500,LOC107719993 coding downstream 413651 18877674 ~ 18899981 (+)
G212889 NA non-coding upstream 65812 17898781 ~ 17898981 (+)
G212870 NA non-coding upstream 78511 17886009 ~ 17886282 (+)
G212804 NA non-coding upstream 138443 17819418 ~ 17826350 (+)
G212783 NA non-coding upstream 182865 17781712 ~ 17781928 (+)
G212782 NA non-coding upstream 183337 17781231 ~ 17781456 (+)
G213191 NA non-coding downstream 53290 18517313 ~ 18565782 (+)
G213192 NA non-coding downstream 66336 18530359 ~ 18534344 (+)
G213221 NA non-coding downstream 242394 18706417 ~ 18713626 (+)
G213244 NA non-coding downstream 382193 18846216 ~ 18898291 (+)
G213314 NA non-coding downstream 495007 18959030 ~ 18960740 (+)
cenpx cenpx other upstream 231787 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 851637 17087284 ~ 17113156 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 1818467 16140330 ~ 16146326 (+)
G211913 NA other upstream 1996034 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 2973343 14988086 ~ 14991450 (+)
smim22 NA other downstream 450703 18914726 ~ 18919942 (+)
G213491 NA other downstream 680051 19144074 ~ 19145240 (+)
gng13b NA other downstream 837331 19301354 ~ 19313218 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other downstream 909213 19373236 ~ 19455034 (+)
LOC113528458 LOC108275785 other downstream 1409053 19873076 ~ 19911732 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G84180 NA non-coding CI01000013 null 9918097 ~ 9918334 (+)
rainbow trout (Oncorhynchus mykiss) G86848 NA non-coding NC_048565.1 CM023219.2 77145235 ~ 77145437 (-)
eurasian perch (Perca fluviatilis) G71632 NA non-coding NC_053118.1 CM020915.1 10211070 ~ 10212499 (-)