LOC113528171


Basic Information

Item Value
gene id LOC113528171
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18409841 ~ 18415347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252283
AAGGGACAAAAACCGTGATTTCAGGTGCTTTAGTTCAGTTACTGTATTTTACAGATCACACGCCAGAGAAAACAATCCGAGAGAAAATACTGGATTCATACCCACGAGATTCAAAGATgagtgagaagaagagaagtAGCCAAAGAGGAACAGCTGGAACAGCTGGAGCGTGCACTCAGGACTCCACATCTGACCAGAGACTGAAGTGTTTCAGGGACATTATGGACGTCGTTCTTCATCTGAGCGATGAggaATGGAAGGCTGTGACCAGG
>TU252284
CGAAAATCGTGACGTCAGCAGCGTCTTCTGCCATCAGACGTTTACTGACGCCTCTCATCGAAAGCTTCGGGATCGATTTGATTCTCCAGGCGaaagacaaactgaagaaaagGGAGGAGTCTAAATGGAGGAAGTGGTCTGACTCAGACGCCTCAGCTCAAAGATCGCCTACGGAGACGTCTGATTTCATCTGTCAGCTCGTTCAGAGAATCGCCACTCA
>XM_034310202.1
GGGACAAAAACCGTGATTTCAGGTGCTTTAGTTCAGTTACTGTATTTTACAGATCACACGCCAGAGAAAACAATCCGAGAGAAAATACTGGATTCATACCCACGAGATTCAAAGATgagtgagaagaagagaagtAGCCAAAGAGGAACAGCTGGAACAGCTGGAGCGTGCACTCAGGACTCCACATCTGACCAGAGACTGAAGTGTTTCAGGGACATTATGGACGTCGTTCTTCATCTGAGCGATGAggaATGGAAGGCTGTGACCAGGGACATGAAGAAGAAGGTCACAAAGTTGGAGTTTGCGGCTCTGTGCACGAAAATCGTGACGTCAGCAGCGTCTTCTGCCATCAGACGTTTACTGACGCCTCTCATCGAAAGCTTCGGGATCGATTTGATTCTCCAGGCGaaagacaaactgaagaaaagGGAGGAGTCTAAATGGAGGAAGTGGTCTGACTCAGACGCCTCAGCTCAAAGATCGCCTACGGAGACGTCTGATTTCATCTGTCAGCTCGTTCAGAGAATCGCCACTCAGACCAAAGCTGCGATGCTGGAGGCGATCCGGAAAGTGGCATCAGGACGAAGGGCGATCTGCTCGGCGAGCGCTTCCTCACCTGCAGAAGATCAGATCTCACAGCCAGATGATCTCAGCATGGCATGCACTAATGAGATCTGTGAAAAGATCTTGGCCCTGTATTACTCTGACGACTTCGACAGACCTGGAGGAGAGAAAACTTCAGGAACGTCGCTAAAGTGCCACCAGGAGGTCCATGGAATAATGAAGGGCTTGGAAGAAGTTGTCTCCATCAGCAGGTCCTCTTTCGAGTTAACTCTAAAATCCTCGAGCCCTGATTCGGTCCCTGTGACGATTAAAGTGATGGCTCCTGATTGTGCTTCATCAGCGAATGCTGAGAGGCTTTTCAGTGATCAGTTTCTGAGTAAAGCCACACAAGAGGTCAGAAAAGTTCTTctgaaaacagaggaaaaaatcGCTGCCTCAGTGTCGTCCCAAACCTCCGTCCCTGTCCGCAGTGAGACAGAAACGAATTCCCTGATGGAGGAGGTCGAGAGCACATCCTCAGAAATTCTgtggaaattattatttatacttatacaGTCACTGTGTAAAAGTTCATCAGGCGTCAGCTGCAACGATGCTGACCAGTCTGCACCAGAAGATGAGCAGAAGAACTTCCTCTCTGGTGCTGAAAAGATCCACGAGAACATCTTCAAGCAGGTGTTTACGTTCGTCTCTGGGCGGAAGCGAGCCATTTCCGAAAAGAACAAGTTGATGTTGGACGTCTGTCCTAAAACTGCTGCTGAGCTCAACGTCAGGTCGGAGAACGTACAGGAGCCTGCTGCTGCCGCTGAACGTTTCCTCGATAAAGCCATTCTGGTTGCGAGTGAGATCCTAGAGAAGTGGTTATCTTCACATATTTCCACAGGTTTATTCAGTGGGAAAGATTCAGGTTCCAGCACAGAGTCGTCACCGACGGCGTCAGTAGATCTGGATCGAGTCACTGCTGATATCGTAAACACGGTGATCAGTGGAATTGCTCTCGAGAATGGAATAACTGACGTGGAAAACGGATCGGAAGCTCGGGTAGGTGGAGCTCAGGTGAACGATGCTGATGCTCGCTCAGCTCCCTATTCAAAGAACTTCTCAGACGTTTTCACGAAGCTCCGAAGTCTTATTGGACTCGGAGATAAAAAGAGACAGTCGTGCTCGTGCCTGAagaatgcagcagcagcagaagtgaCTGCTGCTCAGAGCCTCGTGTCCGTCAGCGAAGCTCCAAACCTGCAGGCTGTTATTGACAGCTGCACTGAGGAGCTCATCGAGAAGAACGCAGATATATTTCTGCATGACGAGCTGCTGGCCAAGTCCAGCTCTTCTAAAGCGCCTCGGCTCAGACGGTTTGCGTTCCTGAGGCCGCGTAAATCCGGTCAGCAGATTGTTTCCGAGGTAAAAAAGACCTGTGAAGTGAGCAGTTCTGTCCCTCTGAGGTCTAAGGAGCTCCTCAATAAAGCCACTCAGGTGGTGAGTGTGATGCTGCTCAGAAGGTTGTCCACAGCAGATTCTTCGATGTGCTCATTAGAAGACGAACAAAGTGCCGTTAGTACCGCAGATTCGCTCGTCAGGGTTTTATACGAATGTGACGAGTCTGTGAAAGAGGAGACTAAGAGCTCTGACGCTCTCGATGCCTTGTCCTGCTTCTTTGACGTCAGAGAAGCAGAATCTGACAAAAAACCACGGAACGTGTTGAGAAAAGTGCGAAGTCTCCTTCAGGCCTTTTTCTCAAAGGCATCTGAAGCTCTGAGCTCTCCCACACACGAGGAGAGGGTGGAGGAGAAGGTGGACCTGGACCTGTGCACCAACAGGGTCATTGCCGAAGTCATTGATTTGTTAAGGAGTGAGCTGACAGCTCCACCTACAGTGAAGAACGATGACGCCTATTTCCACTCCAAATCCACCAGGCGTGTGAGTGACATCATCTTCCGAATGGTGGAATCCTGTCCTCTGCTGCCCTCACAATTCCCAAAGGAACGCCACACGGAATCGCGTCTCAGGAAAGTGGCGTCCGCTTTAAATCTGCAGGTCGTTTCTACTGCTTCTGAGATTTCCCGAACTGTTAGCTCCACTGTGCAGCAGTTTATAGATGCAGACAGGAAGTCGAGGCCTTCGGTCCAGAGCAGTTCATTCGCTCCTCTGCACCTTTTCACTGTGGTGCGCAACAAGCTGAAGGCTTTCTTCACTTCCTTCTCTAAACGTGTCGCTGATGATGAAAGGACAGATGCATCAGCACAGTCAGAGAGGGATGAGGATCGTGTCACTCCCATCTACATCAGTGAGGATGGCACGGTTCATGAGCTAAGAGAGCTGGAGGATCTTTCTCCGGAGGAGATGATACATCGACGAGCACGTGCTATTACGGACGTAATCGCAAAACTCCTCCTGAGGAACGTGGACAGGGCAGGAGATGTTGGCCAGCGTTCATCAGATTCTGTTCTGGGGAGAGGGAACATCACGTTACGCTCCATCCGGTTACCTTCTCAGTGCGTTTACACGTTTGCAGAGGAGTCCATCAAGGCTTTACTGCAGAATGTGCTGAACGCCGGGCCGAGTGCAGGAAACGAAGCACAGGAAAGCAGCTTGGCGGACGAATCGACCTGTTGTCCTTCTGCTACAGCACTCGCACGTAAAATCGAGGACGCTGGGACTTCCTCTGTGTGTCGTATTAACGATTTGCATCCTAAGTCTCCTCAGCTATCAGCAGCTTCCTCCAGCTCGTGTCCTCGTGCTGACGTGGAGGAGACTCGGGAACATCTGAGCATCACCGATCAGCAGAATCGAAGCGGAAGTGATGGATGCTCCTCACATCCAGCAGCTGAGgatcaggagaagaaaaagaggcttGGACTCCTCACAAGGAACGGGCGCATGATCAGAAGTGGAGTTAAGTGTCCCAAGAAGTGGAAGAAGAACCAGAGCAGAGTTCCTCTGACAGGCGATGACCAACCGACCCCTTCCACCTCCGCAAATCTTCACAGCTCTTCACACAGAGAATCGAAGGCCTCGGGGTCGGTCTTCAAGAATGCTCGCAGAAGGCTGGGCAGGATCTTCTCCAACATCTCCAAGACCTTCACCAGCTGCTCCAACCCTGAAACCGCTCCATAAACTCGTCAGCGTCGGCCTGTGCCCGGTGACCGTTAACCGAGTTACCGTGGTAACAGACACCAGCGAcggaaacacaaacaaacaaacaaacaaaacaaacaaacaaacaaacaaaaaacaaacaaac

Function

GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0032501 multicellular organismal process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252283 False 272 lncRNA 0.46 4 18409841 18410859
TU252284 False 220 lncRNA 0.50 2 18411021 18411582
XM_034310202.1 True 3808 mRNA 0.50 8 18409843 18415347

Neighbor

gene id symbol gene type direction distance location
tac4 NA coding upstream 41252 18360781 ~ 18368589 (+)
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding upstream 346180 18062037 ~ 18063661 (+)
mfsd11 mfsd11,mfs11 coding upstream 366739 18021085 ~ 18043102 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding upstream 599351 17808272 ~ 17810490 (+)
ccdc137 NA coding upstream 642172 17749174 ~ 17767669 (+)
LOC113528424 NA coding downstream 33939 18449286 ~ 18451161 (+)
sept9a sept9,LOC108411966 coding downstream 57037 18472384 ~ 18558892 (+)
tnrc6c1 tnrc6c,LOC107724432 coding downstream 218151 18633498 ~ 18697593 (+)
yipf2 yipf2 coding downstream 377957 18793304 ~ 18801817 (+)
clpp clpp,LOC107753176,LOC107590418,LOC107689627 coding downstream 413946 18829293 ~ 18836201 (+)
G212899 NA non-coding upstream 427035 17980998 ~ 17982806 (+)
G212889 NA non-coding upstream 510860 17898781 ~ 17898981 (+)
G212870 NA non-coding upstream 523559 17886009 ~ 17886282 (+)
G212804 NA non-coding upstream 583491 17819418 ~ 17826350 (+)
G212783 NA non-coding upstream 627913 17781712 ~ 17781928 (+)
G213191 NA non-coding downstream 101966 18517313 ~ 18565782 (+)
G213192 NA non-coding downstream 115012 18530359 ~ 18534344 (+)
G213221 NA non-coding downstream 291070 18706417 ~ 18713626 (+)
G213244 NA non-coding downstream 430869 18846216 ~ 18898291 (+)
G213314 NA non-coding downstream 543683 18959030 ~ 18960740 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other upstream 66881 18183693 ~ 18342960 (+)
cenpx cenpx other upstream 676835 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 1296685 17087284 ~ 17113156 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 2263515 16140330 ~ 16146326 (+)
G211913 NA other upstream 2441082 15918217 ~ 15968759 (+)
zgc:163143 NA other downstream 9832 18425179 ~ 18434528 (+)
smim22 NA other downstream 499379 18914726 ~ 18919942 (+)
G213491 NA other downstream 728727 19144074 ~ 19145240 (+)
gng13b NA other downstream 886007 19301354 ~ 19313218 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other downstream 957889 19373236 ~ 19455034 (+)

Expression


Co-expression Network