zgc:163143


Basic Information

Item Value
gene id zgc:163143
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18425179 ~ 18434528 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252290
TCCACCCCTAGACATGGTTTTGCAGCGAAGGGTGAACAGCGTTTGTTAGAGTACCGGTGGGGAAATATTGTTGACGAGGCGAGATAGCATTTTATTGCTGAGCATAACTGTACAAAATAGCACTAGGGACAAGAGCCTTGGATTTCACAGTTGAAGGGAACCATAGACAAATTGGTCCTTGCTCTCCCTCCAAGCAGATCATCACGCTGCAAGTCTCCGTCTGCAGTCCCTACAAAGCATGTACAAGCCACAACTGAGAAATCAGAGAAACCCCACTTGAAAGAAACTGCTCAAGAACAGCCACATTTTTGCCCAAACCTGATGGATAGgagGCTCTTTGCTTCATGGACAACTCTAGAAGATGATTCACTTGAAAGACGAATGACCATACCCAGTTTCTTTCACAGTGGTTACTGTCTGCCTAGGGTATTGTAATTGGTAGTGCCAATTGGTATGCTAGGTGTATATTAATAAATCCTATAGAAAATCAAATAGTCCATATTAGCAGCTGTGCTTAATAGATGTGCTGTTTGATAAATGTAAGTGGTGAATCTGCTgttcttttttatattcaatcttttttttattattttagagtATTCGCTGGGAAGGAGACGATGATTTAAATAGTGTAAGTCTTATTGATTTTCATGaagcttaaaggaaaactccaccctaaaatacattaaaatgtctacactgaaatatttatgatgtgc
>TU252293
TCTGGTggttaacaaaaacaatagcaaTCGTAAAAAGTCGCCGATTCCACCCCTAGACATGGTTTTGCAGCGAAGGGTGAACAGCGTTTGTTAGAGTACCGGTGGGGAAATATTGTTGACGAGGCGAGATAGCATTTTATTGCTGAGCATAACTGTACAAAATAGCACTAGGGACAAGAGCCTTGGATTTCACAGAGCGCCGCCATGTTGATAGTGATGTCATTGAGTTGCCGGAGAAGTAGGAGCGCGAGAGAAACAGCAGTATTTTTGAGTACTAGTGTTTGAACGATCCTGAGTGGGGTGAAAAGCATGGACAATTCCCAAGCAAAATCAAAGCTTAATGAGTTCAAATAGATTTGTATgaagttgtgttttatttagagCAGGATGTTTTATTGTATAGCTTTTAATTGTAATTGAGAACTATGGTCTATAAGCCCATATGgcacttttttaaacagaaaaaaaacgtATTACCTTATTATAAGCTTATTACTG
>TU252294
TCTGGTggttaacaaaaacaatagcaaTCGTAAAAAGTCGCCGATTCCACCCCTAGACATGGTTTTGCAGCGAAGGGTGAACAGCGTTTGTTAGAGTACCGGTGGGGAAATATTGTTGACGAGGCGAGATAGCATTTTATTGCTGAGCATAACTGTACAAAATAGCACTAGGGACAAGAGCCTTGGATTTCACAGATCATCACGCTGCAAGTCTCCGTCTGCAGTCCCTACAAAGCATGTACAAGCCACAACTGAGAAATCAGAGAAACCCCACTTGAAAGAAACTGCTCAAGAACAGCCACATTTTTGCCCAAACCTGATGGATAGgaggtttgtgtttttatgtgtgcaTTGTATATTGGAATGGCATGTTCATTAATATATCAAATATCAGATATTAATGTGCATGGAGTCTCATTTCTCAGTGctgtaaatgtttgaaatatcaGTCTCtctaaaatatttacacattgtTATTTACTATGTCACTGATTGCTCCTTACACTGTTATTCTTACTTGATTAGGCTCTTTGCTTCATGGACAACTCTAGAAGATGATTCACTTGAAAGACGAATGACCATACCCAGTTTCTTTCACAGTGGTTACTGTCTGCCTAGGGTATTGTAATTGGTAGTGCCAATTGGTATGCTAGGTGTATATTAATAAATCCTATAGAAAATCAAATAGTCCATATTAGCAGCTGTGCTTAATAGATGTGCTGTTTGATAAATGTAAGTGGTGAATCTGCTgttcttttttatattcaatcttttttttattattttagagtATTCGCTGGGAAGGAGACGATGATTTAAATAGTGTAAGTCTTATTGATTTTCATGaagcttaaaggaaaactccaccctaaaatacattaaaatgtctacactgaaatatttatgatgtgc
>XM_034309691.1
agaagaagactgaCATCTGGTggttaacaaaaacaatagcaaTCGTAAAAAGTCGCCGATTCCACCCCTAGACATGGTTTTGCAGCGAAGGGTGAACAGCGTTTGTTAGAGTACCGGTGGGGAAATATTGTTGACGAGGCGAGATAGCATTTTATTGCTGAGCATAACTGTACAAAATAGCACTAGGGACAAGAGCCTTGGATTTCACAGATCATCACGCTGCAAGTCTCCGTCTGCAGTCCCTACAAAGCATGTACAAGCCACAACTGAGAAATCAGAGAAACCCCACTTGAAAGAAACTGCTCAAGAACAGCCACATTTTTGCCCAAACCTGATGGATAGgagGCTCTTTGCTTCATGGACAACTCTAGAAGATGATTCACTTGAAAGACGAATGACCATACCCAGTTTCTTTCACAGTGGTTACTGTCTGCCTAGGagtATTCGCTGGGAAGGAGACGATGATTTAAATAGTATGCCAAATGTAGTTCATGGAGGACAATCAAGTCCCTATATTATAGAGATTAACGAGAGATGGGAATGGCTTGGTCTTGATATAAGGGGGCCATTCTCTATCACAACGCGCAGGCATACACATATTATGACTCTTACTGACTACTATTCCAAATGGGTGGAGGCTTTTCCTCTGACGCACAACATGATCCAAGATGCAGCGGTGTTTCTTGCAGAAGTCATCCGTCAGCTGGGATACCCGCTGGCAGTCCTCTCGCGATTTCCAAAACAGCTTCTTATAGAGattaatAATGAactagaaaaacaaataaacataaacacaagcTTCCTGGTTATACACCACTGCCAAACAGGATACTTAGATCTGGTCACCGAGTCTCTCCTGAACAAGCTGATATATGATCTGGTAAAGAAATATGCAGACACCTGGCACATCTACCTGCCTGCTGCATGTCTACAGCTGTGTTGCACAGAGCATCCCACAACCGGCAAGAAGCCCTTTACAGTCATGTACCGTAATGGCCCTCCATCCTTCTCTTCATACAGAGAACTGCCTTACAGTGAGTCTGATATTCGCCTGAGTTCCTTTGTCATTGCACCTGTTGATGCCAGCAATCGAAATACCTCcaagtgttacaGTGCCCAATCTAGTCTGCTTAGTTAGAGAAGAACAGTCAGAGCAGAAGCCCATTTCATCAAGTCTTCAACTGTGAAAGTGTAAACCTGGTCGATATTgccaaaaattttatttttctatatttagtGAATTGTGATATCTATCATGACATAGAATTTCATAACACTGTCACAGTTTTAAAGAATATTCTAAATAATACaga
>XM_034309692.1
agaagaagactgaCATCTGGTggttaacaaaaacaatagcaaTCGTAAAAAGTCGCCGATTCCACCCCTAGACATGGTTTTGCAGCGAAGGGTGAACAGCGTTTGTTAGAGTACCGGTGGGGAAATATTGTTGACGAGGCGAGATAGCATTTTATTGCTGAGCATAACTGTACAAAATAGCACTAGGGACAAGAGCCTTGGATTTCACAGTTGAAGGGAACCATAGACAAATTGGTCCTTGCTCTCCCTCCAAGCAGATCATCACGCTGCAAGTCTCCGTCTGCAGTCCCTACAAAGCATGTACAAGCCACAACTGAGAAATCAGAGAAACCCCACTTGAAAGAAACTGCTCAAGAACAGCCACATTTTTGCCCAAACCTGATGGATAGgagGCTCTTTGCTTCATGGACAACTCTAGAAGATGATTCACTTGAAAGACGAATGACCATACCCAGTTTCTTTCACAGTGGTTACTGTCTGCCTAGGagtATTCGCTGGGAAGGAGACGATGATTTAAATAGTATGCCAAATGTAGTTCATGGAGGACAATCAAGTCCCTATATTATAGAGATTAACGAGAGATGGGAATGGCTTGGTCTTGATATAAGGGGGCCATTCTCTATCACAACGCGCAGGCATACACATATTATGACTCTTACTGACTACTATTCCAAATGGGTGGAGGCTTTTCCTCTGACGCACAACATGATCCAAGATGCAGCGGTGTTTCTTGCAGAAGTCATCCGTCAGCTGGGATACCCGCTGGCAGTCCTCTCGCGATTTCCAAAACAGCTTCTTATAGAGattaatAATGAactagaaaaacaaataaacataaacacaagcTTCCTGGTTATACACCACTGCCAAACAGGATACTTAGATCTGGTCACCGAGTCTCTCCTGAACAAGCTGATATATGATCTGGTAAAGAAATATGCAGACACCTGGCACATCTACCTGCCTGCTGCATGTCTACAGCTGTGTTGCACAGAGCATCCCACAACCGGCAAGAAGCCCTTTACAGTCATGTACCGTAATGGCCCTCCATCCTTCTCTTCATACAGAGAACTGCCTTACAGTGAGTCTGATATTCGCCTGAGTTCCTTTGTCATTGCACCTGTTGATGCCAGCAATCGAAATACCTCcaagtgttacaGTGCCCAATCTAGTCTGCTTAGTTAGAGAAGAACAGTCAGAGCAGAAGCCCATTTCATCAAGTCTTCAACTGTGAAAGTGTAAACCTGGTCGATATTgccaaaaattttatttttctatatttagtGAATTGTGATATCTATCATGACATAGAATTTCATAACACTGTCACAGTTTTAAAGAATATTCTAAATAATACaga
>XM_034309693.1
agaagaagactgaCATCTGGTggttaacaaaaacaatagcaaTCGTAAAAAGTCGCCGATTCCACCCCTAGACATGGTTTTGCAGCGAAGGGTGAACAGCGTTTGTTAGAGTACCGGTGGGGAAATATTGTTGACGAGGCGAGATAGCATTTTATTGCTGAGCATAACTGTACAAAATAGCACTAGGGACAAGAGCCTTGGATTTCACAGATCATCACGCTGCAAGTCTCCGTCTGCAGTCCCTACAAAGCATGTACAAGCCACAACTGAGAAATCAGAGAAACCCCACTTGAAAGAAACTGCTCAAGAACAGCCACATTTTTGCCCAAACCTGATGGATAGgagGCTCTTTGCTTCATGGACAACTCTAGAAGATGATTCACTTGAAAGACGAATGACCATACCCAGTTTCTTTCACAGTGGTTACTGTCTGCCTAGGGTATTGTAATTGGTAGTGCCAATTGagtATTCGCTGGGAAGGAGACGATGATTTAAATAGTATGCCAAATGTAGTTCATGGAGGACAATCAAGTCCCTATATTATAGAGATTAACGAGAGATGGGAATGGCTTGGTCTTGATATAAGGGGGCCATTCTCTATCACAACGCGCAGGCATACACATATTATGACTCTTACTGACTACTATTCCAAATGGGTGGAGGCTTTTCCTCTGACGCACAACATGATCCAAGATGCAGCGGTGTTTCTTGCAGAAGTCATCCGTCAGCTGGGATACCCGCTGGCAGTCCTCTCGCGATTTCCAAAACAGCTTCTTATAGAGattaatAATGAactagaaaaacaaataaacataaacacaagcTTCCTGGTTATACACCACTGCCAAACAGGATACTTAGATCTGGTCACCGAGTCTCTCCTGAACAAGCTGATATATGATCTGGTAAAGAAATATGCAGACACCTGGCACATCTACCTGCCTGCTGCATGTCTACAGCTGTGTTGCACAGAGCATCCCACAACCGGCAAGAAGCCCTTTACAGTCATGTACCGTAATGGCCCTCCATCCTTCTCTTCATACAGAGAACTGCCTTACAGTGAGTCTGATATTCGCCTGAGTTCCTTTGTCATTGCACCTGTTGATGCCAGCAATCGAAATACCTCcaagtgttacaGTGCCCAATCTAGTCTGCTTAGTTAGAGAAGAACAGTCAGAGCAGAAGCCCATTTCATCAAGTCTTCAACTGTGAAAGTGTAAACCTGGTCGATATTgccaaaaattttatttttctatatttagtGAATTGTGATATCTATCATGACATAGAATTTCATAACACTGTCACAGTTTTAAAGAATATTCTAAATAATACaga
>XM_034309694.1
agaagaagactgaCATCTGGTggttaacaaaaacaatagcaaTCGTAAAAAGTCGCCGATTCCACCCCTAGACATGGTTTTGCAGCGAAGGGTGAACAGCGTTTGTTAGAGTACCGGTGGGGAAATATTGTTGACGAGGCGAGATAGCATTTTATTGCTGAGCATAACTGTACAAAATAGCACTAGGGACAAGAGCCTTGGATTTCACAGATCATCACGCTGCAAGTCTCCGTCTGCAGTCCCTACAAAGCATGTACAAGCCACAACTGAGAAATCAGAGAAACCCCACTTGAAAGAAACTGCTCAAGAACAGCCACATTTTTGCCCAAACCTGATGGATAGgagGCTCTTTGCTTCATGGACAACTCTAGAAGATGATTCACTTGAAAGACGAATGACCATACCCAGTTTCTTTCACAGTGGTTACTGTCTGCCTAGGGTATTGTAATTGagtATTCGCTGGGAAGGAGACGATGATTTAAATAGTATGCCAAATGTAGTTCATGGAGGACAATCAAGTCCCTATATTATAGAGATTAACGAGAGATGGGAATGGCTTGGTCTTGATATAAGGGGGCCATTCTCTATCACAACGCGCAGGCATACACATATTATGACTCTTACTGACTACTATTCCAAATGGGTGGAGGCTTTTCCTCTGACGCACAACATGATCCAAGATGCAGCGGTGTTTCTTGCAGAAGTCATCCGTCAGCTGGGATACCCGCTGGCAGTCCTCTCGCGATTTCCAAAACAGCTTCTTATAGAGattaatAATGAactagaaaaacaaataaacataaacacaagcTTCCTGGTTATACACCACTGCCAAACAGGATACTTAGATCTGGTCACCGAGTCTCTCCTGAACAAGCTGATATATGATCTGGTAAAGAAATATGCAGACACCTGGCACATCTACCTGCCTGCTGCATGTCTACAGCTGTGTTGCACAGAGCATCCCACAACCGGCAAGAAGCCCTTTACAGTCATGTACCGTAATGGCCCTCCATCCTTCTCTTCATACAGAGAACTGCCTTACAGTGAGTCTGATATTCGCCTGAGTTCCTTTGTCATTGCACCTGTTGATGCCAGCAATCGAAATACCTCcaagtgttacaGTGCCCAATCTAGTCTGCTTAGTTAGAGAAGAACAGTCAGAGCAGAAGCCCATTTCATCAAGTCTTCAACTGTGAAAGTGTAAACCTGGTCGATATTgccaaaaattttatttttctatatttagtGAATTGTGATATCTATCATGACATAGAATTTCATAACACTGTCACAGTTTTAAAGAATATTCTAAATAATACaga

Function

NR:

description
PREDICTED: uncharacterized protein LOC107689697 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252290 False 719 lncRNA 0.39 3 18425239 18427626
TU252293 False 498 lncRNA 0.39 2 18425194 18426053
TU252294 False 912 lncRNA 0.37 2 18425194 18427626
XM_034309691.1 False 1313 mRNA 0.43 10 18425179 18434528
XM_034309692.1 True 1360 mRNA 0.43 10 18425179 18434528
XM_034309693.1 False 1338 mRNA 0.43 10 18425179 18434528
XM_034309694.1 False 1325 mRNA 0.42 10 18425179 18434528

Neighbor

gene id symbol gene type direction distance location
tac4 NA coding upstream 56590 18360781 ~ 18368589 (+)
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding upstream 361518 18062037 ~ 18063661 (+)
mfsd11 mfsd11,mfs11 coding upstream 382077 18021085 ~ 18043102 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding upstream 614689 17808272 ~ 17810490 (+)
ccdc137 NA coding upstream 657510 17749174 ~ 17767669 (+)
LOC113528424 NA coding downstream 14758 18449286 ~ 18451161 (+)
sept9a sept9,LOC108411966 coding downstream 37856 18472384 ~ 18558892 (+)
tnrc6c1 tnrc6c,LOC107724432 coding downstream 198970 18633498 ~ 18697593 (+)
yipf2 yipf2 coding downstream 358776 18793304 ~ 18801817 (+)
clpp clpp,LOC107753176,LOC107590418,LOC107689627 coding downstream 394765 18829293 ~ 18836201 (+)
G212899 NA non-coding upstream 442373 17980998 ~ 17982806 (+)
G212889 NA non-coding upstream 526198 17898781 ~ 17898981 (+)
G212870 NA non-coding upstream 538897 17886009 ~ 17886282 (+)
G212804 NA non-coding upstream 598829 17819418 ~ 17826350 (+)
G212783 NA non-coding upstream 643251 17781712 ~ 17781928 (+)
G213191 NA non-coding downstream 82785 18517313 ~ 18565782 (+)
G213192 NA non-coding downstream 95831 18530359 ~ 18534344 (+)
G213221 NA non-coding downstream 271889 18706417 ~ 18713626 (+)
G213244 NA non-coding downstream 411688 18846216 ~ 18898291 (+)
G213314 NA non-coding downstream 524502 18959030 ~ 18960740 (+)
LOC113528171 NA other upstream 9832 18409841 ~ 18415347 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other upstream 82219 18183693 ~ 18342960 (+)
cenpx cenpx other upstream 692173 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 1312023 17087284 ~ 17113156 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 2278853 16140330 ~ 16146326 (+)
smim22 NA other downstream 480198 18914726 ~ 18919942 (+)
G213491 NA other downstream 709546 19144074 ~ 19145240 (+)
gng13b NA other downstream 866826 19301354 ~ 19313218 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other downstream 938708 19373236 ~ 19455034 (+)
LOC113528458 LOC108275785 other downstream 1438548 19873076 ~ 19911732 (+)

Expression


Co-expression Network