LOC117598999


Basic Information

Item Value
gene id LOC117598999
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18375684 ~ 18377363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252457
ATTGATCATGGCTTTTTATAGTCGTGGTGCACGCGCTTAACTCAGAGTCAACCTACTCAGAGTTGATTGAACTAACTCATTTCAGCTGTTCTGTAACCGAAAACTTGGGAGTTTCCTATCTAAGACCTCTGAGAGGGAGAATGGATTTGTAAAGATGAAAAAGGGGGACAATTTTACCATGGAGTGCAACACAAAGgacaataaaaatgatcatttatcaCTATATGCCAGACTCCCGAGAAAGCATGTAGTGTTGGCCTTTGACGGACATACTAACAACTTTAGTCTCGGTGAGGAGTACACTGAAAGAGTGAAGATCAGTGGCACCATGCACAAACTAACTGTGAGGATTAGGGACCTGCAGCTGAACGACACTGGACTGTACATAGGCCTGTATAGAAAatttaatttggaaaaaaatgtagatgaggaagaagaaggcTGCAGCATTCTCCTGTTTGTGAATGATGTGGATAAGAC
>XR_004579422.1
GAGTTTCCTATCTAAGACCTCTGAGAGGGAGAATGGATTTGTAAAGATGAAAAAGGGGGACAATTTTACCATGGAGTGCAACACAAAGgacaataaaaatgatcatttatcaCTATATGCCAGACTCCCGAGAAAGCATGTAGTGTTGGCCTTTGACGGACATACTAACAACTTTAGTCTCGGTGAGGAGTACACTGAAAGAGTGAAGATCAGTGGCACCATGCACAAACTAACTGTGAGGATTAGGGACCTGCAGCTGAACGACACTGGACTGTACATAGGCCTGTATAGAAAatttaatttggaaaaaaatgtagatgaggaagaagaaggcTGCAGCATTCTCCTGTTTGTGAATGATGTGGATAAGACAAATCAACTGGTAAAGGATCATCTGCCATGCCTGAGCCACTGGTGCTGGTCTTTGCCCTGACTCTATGCTCTATGCTTTTAGTGTGTTTCCGGTGATGTGGGTGTTAGACCACAGGTTGGCACAACAGATCAGTGTGCAGCAATTTGAATGGACTGGTCTTTATCATTTTCATGTGTACGGAATTAAATGAGGAAACGGGAGGTAGTCTCGTGACATCTCATCAGGGCTCTTTGTTTTGCCTTTTGCATGCTTTTCAGAGCTAATTGTGCTTTCTGACATAGACAGGCGCTCCCTCGCACACACGCATGCTCTTAAAGATCAGCGCTCACTGCTCGTCTTCCATGCCACTCACACCTTTGATCTCTAAGCTGCTGTtcagttaaaaacaaatg

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU252457 False 480 TUCP 0.41 3 18376077 18377363
XR_004579422.1 True 765 lncRNA 0.44 3 18375684 18377255

Neighbor

gene id symbol gene type direction distance location
LOC113528252 dnaaf5 coding downstream 213805 18101441 ~ 18161879 (-)
jmjd6 jmjd6,LOC107748872,LOC107565873 coding downstream 389796 17981013 ~ 17985888 (-)
foxj1a LOC108274501,LOC108274674,LOC108263299 coding downstream 441268 17930709 ~ 17934416 (-)
crebbpb LOC108279275,LOC107661648,LOC107553628 coding downstream 1098328 17180996 ~ 17277356 (-)
glis2b LOC108276531 coding downstream 1336740 16974721 ~ 17038944 (-)
LOC117598994 LOC101884462,LOC107081104,LOC101885893 coding upstream 12519 18389882 ~ 18394978 (-)
LOC117598995 LOC108191637 coding upstream 199241 18576604 ~ 18577377 (-)
znf207a znf207,LOC108278632,LOC108444040 coding upstream 333717 18711080 ~ 18720341 (-)
slc25a23b slc25a23b,LOC108274688,LOC107601238,LOC107698653,LOC108444036,LOC107724434,LOC107689624 coding upstream 358290 18735653 ~ 18756676 (-)
timm29 c2h19orf52 coding upstream 412818 18790181 ~ 18792959 (-)
LOC117599003 NA non-coding downstream 299297 18070785 ~ 18076387 (-)
G213028 NA non-coding downstream 332405 18041404 ~ 18043279 (-)
G212891 NA non-coding downstream 475414 17900070 ~ 17900270 (-)
G212871 NA non-coding downstream 489442 17886012 ~ 17886242 (-)
G212856 NA non-coding downstream 495838 17879629 ~ 17879846 (-)
G213407 NA non-coding upstream 415072 18792435 ~ 18849147 (-)
G213549 NA non-coding upstream 646395 19023758 ~ 19072985 (-)
G213716 tnrc6a non-coding upstream 1039821 19417184 ~ 19422415 (-)
G213879 NA non-coding upstream 1285974 19663337 ~ 19663762 (-)
G214159 NA non-coding upstream 1643189 20020552 ~ 20056144 (-)
mettl23 mettl23 other downstream 321468 18050735 ~ 18054216 (-)
tsen54 tsen54 other downstream 503103 17811613 ~ 17872581 (-)
G212750 LOC100136012,LOC107575789 other downstream 700400 17674827 ~ 17675284 (-)
LOC113528038 caskin2 other downstream 857157 17390186 ~ 17518527 (-)
G212700 NA other downstream 949783 17386211 ~ 17425901 (-)
si:dkey-204f11.64 LOC108274053 other upstream 446108 18823471 ~ 18827734 (-)
rbbp6 rbbp6 other upstream 1051854 19429217 ~ 19448559 (-)
lyar lyar other upstream 1562991 19940354 ~ 19984149 (-)
slc2a9l2 slc2a9 other upstream 1662424 20039787 ~ 20138213 (-)
hs3st1 hs3st1 other upstream 1827976 20205339 ~ 20213629 (-)

Expression


Co-expression Network