G213192


Basic Information

Item Value
gene id G213192
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18530359 ~ 18534344 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252492
GCTGCTGAAAAAGTTTGTTGTGATTTTTCTTTGCCGCAAGCCATAACAAGTCACATTCTCAGTTCTTGACTGAGGAGGATGTTTAAAGTTTTCCATGAACTCACACTATGCAGTGTCTCCAATGTCGTGTGAGCTAACTGTATTCCGTTTATGCGGAGCCGACAGATCAACAGGTGGAGGACTTGGGTAATTCAACTTGAGATTCAAGATTAAGTTTAGACTCTTTCAagtcctcttcctcttcccctggtttcacagtttcacagtGTCATCAGCTAAAGGCGTTGCATAAACACACCCTAGAAACCATGTTTGAGCCCTCTGCATCCTCGTCTCAATAGAGATGAGTGATAAGTGACTATTTCTTTCACAAATATGCAGCATTTAATTGGTTTCATCAATATTGTCTATGAAAAGTCTAGAAATTTCTAATGGTCACTTAGAACATTAGACATCAGTCATCTGCCGTGTCTGTGAAATTGCGTCTTTCTGTGAAAAGAGGCAGTTTTTGGTCACATTTACTGAAGAAATGCTAGAAGTCTGGCTTGGGAGATTACTCTGCAATTAATTTAAGTGGATAATCTCATCTGAATGGTGAtccaagaactgctgctgtagtcACAAAGGCTGCCATGttctcatcccaggactcttactCACAGTAtcctcatactgaacatccatTCAACACACTTactactgtttgactttatagtatagcTGTAGGAGAGTAATGATTTCTAATCTcgctatccggtgtcaccctgAAGTGGATGGGTTCCCTCAGAATTTCTTCCTtatgtcttctcagggagtttttgcTTGCCACCGTCATGCCTGGCTTGCTCACTGGgatttaaatctacatctggatttctataaagctgttttttgGCAATATCTGTTGTTAAAACATAATACTAAGTGCTCATTGAATTGAAATGCTCCACACTGAGCCTTTCTCTATAAGAGGCTAACGGTTCAGCCATGGGTTTTGGCATCTGCTGGGTTTGTAATTCTTCATGAAGCTGCAGGCCAACTCTTTCTTCTGTACTCTCTAAGAATCTTTAAAGTGATATCCTTAGTCAAGGATATCACTGAACAAGGGCTAAAACAAGCAATATGAACATGATATATGACTGGCTTCTTCGGTAAATAACGGGGCTTAAAATTATAGTTGTACCATTTTCTCAAAGACAAGCTGTTTGTAACGCTGGAATGCGAAGGACCAAGAGTGGACATCAAGTCCCGGAGTCCCAGAACATGCTCTCTGTGgaaatgccatttttaaaaatgctgtttgggAAATAGCAGTTGTTGAGCATATAACGCTGCTTTTAATATGCTGTTATGATTCAGTATTTCCACTGTTCTTTCACCTGGCACTATGGCGATTGGCCGATTGAAATCTCTAGCAGCTGATTTTGGTCACAGGGACAAGCATTTATCTGCTTGTTCCTCTCTTGTTCCTCTGCGTGTCAGAGAGTTCAAGAGCTTTCAGCACAATCACAATGATTGGTAACTGGTTTCCATTCTGTACTATAGCCAGGAAgtaaaaatgggcaagtgttaCGCTATACCTACACTATATGATCCTTCAGCATTAATATTGTACTAAAACTTAAAAAGTGTTTCTAAAGTGCTTCTTTACTTAAGCATCAGAGTTTCATGGAACCACGCTATCATTGTGCGCATTCAGTGAAACAGAACATTGTGTCTGTCAGGATTTTATGACATTTGTCATTGCCACTGTGtgcattgtgtttttaaagGCTCTAGACGGCTTTCTTCTTGTACAGCGTTTCCATTGACCTTAGATTTCCTTCCTTGTTGAACTTAGAGATATGTGAAGAGATATGAGAGAGGATAAGCAGGACTGTTTgggattttaatatttaatgtttcacAAGGTGGTTCAAGGTGCACAGTTGgtacaatatacagtaatgtgCGTAGGACCAGTGCTGGGCTGTGTTCCCTTTTGAAAGTTCCCATGCTGCTTGTTTGGTGTAATAACTGTAAGTAGAGAACTAACCTCAGTAAAACTGCATAATCTGGACCCACCCACTAACCAAAGCAGAAAGCAATGGCCTGAGTTTTTATTTGGATGGAGGTTAATTCTGGCTTATTACAAAATGGAAAATGCCACATTGTTTTAATTAAGCTGATTAACATGTATGTTGTTGAAGGTTGCCGCACATGAGCTGCAAAATTTCAGTTTGAGCAACAGATTAAGAAAAACAGattatgtaatatttcaaaACTGGAAAACAGTGAATAAATCACTGTTTCTATCCATGTTTACGAAATAGGGATGAGGGACTAATGTTGCATATGGTCTTGTTTGTGTCCcactttatattaaaattttcatttaagaatgacaaaacacacacaaatgaatgtacaagttattattttttaaaaattaatgaagCACGTGGTCTGCATGGGCTATATAAAGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252492 True 2468 lncRNA 0.39 2 18530359 18534344

Neighbor

gene id symbol gene type direction distance location
LOC113528424 NA coding upstream 79198 18449286 ~ 18451161 (+)
tac4 NA coding upstream 161770 18360781 ~ 18368589 (+)
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding upstream 466698 18062037 ~ 18063661 (+)
mfsd11 mfsd11,mfs11 coding upstream 487257 18021085 ~ 18043102 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding upstream 719869 17808272 ~ 17810490 (+)
tnrc6c1 tnrc6c,LOC107724432 coding downstream 99154 18633498 ~ 18697593 (+)
yipf2 yipf2 coding downstream 258960 18793304 ~ 18801817 (+)
clpp clpp,LOC107753176,LOC107590418,LOC107689627 coding downstream 294949 18829293 ~ 18836201 (+)
rgs9a rgs9,rgs9a,LOC108278703,LOC108438013,LOC107590386,LOC107721500,LOC107719993 coding downstream 343330 18877674 ~ 18899981 (+)
engase engase coding downstream 404227 18938571 ~ 18954755 (+)
G212903 NA non-coding upstream 66336 17964793 ~ 18464023 (+)
G212899 NA non-coding upstream 547553 17980998 ~ 17982806 (+)
G212889 NA non-coding upstream 631378 17898781 ~ 17898981 (+)
G212870 NA non-coding upstream 644077 17886009 ~ 17886282 (+)
G212804 NA non-coding upstream 704009 17819418 ~ 17826350 (+)
G213221 NA non-coding downstream 172073 18706417 ~ 18713626 (+)
G213244 NA non-coding downstream 311872 18846216 ~ 18898291 (+)
G213314 NA non-coding downstream 424686 18959030 ~ 18960740 (+)
LOC117598754 NA non-coding downstream 545118 19079462 ~ 19082157 (+)
G213475 NA non-coding downstream 572866 19107210 ~ 19161120 (+)
zgc:163143 NA other upstream 95831 18425179 ~ 18434528 (+)
LOC113528171 NA other upstream 115012 18409841 ~ 18415347 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other upstream 187399 18183693 ~ 18342960 (+)
cenpx cenpx other upstream 797353 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 1417203 17087284 ~ 17113156 (+)
smim22 NA other downstream 380382 18914726 ~ 18919942 (+)
G213491 NA other downstream 609730 19144074 ~ 19145240 (+)
gng13b NA other downstream 767010 19301354 ~ 19313218 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other downstream 838892 19373236 ~ 19455034 (+)
LOC113528458 LOC108275785 other downstream 1338732 19873076 ~ 19911732 (+)

Expression


Co-expression Network