G213244


Basic Information

Item Value
gene id G213244
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18846216 ~ 18898291 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252548
AAAAGGAGTGAGGAAGCAGAGATTATTAAACTGTACATGGAGCGCAGGGTCACTGTTCTGCAGTTCAGTTCTACAAGTTTAGTAGGATTACAGTGACATGAGTCAGGAAATGTAACGTTTAAAACATCTacatacaaaattacaaaaaaaaaaaggcactaaaTTAGATTTAGTCTTTTGTGCAGGTTGCATAATTCTACATAATCAACATCCTGGATTCTTCCGGGAAACATTTCTCtacgaaaaacaaaaacgcaTTTTGCTGATAAGATATTCACACAGTGGAGCATATTTGCATAATAACCGTGACATTAAGACCTCAGTGGAAAATTTtaacacctaaacacacacacacgcactcaggCACAGAGATACAAGTGAATTACAGTAGTGCGTCTGTGTGTTGAATACAGCGTTAACCTCAAGACCCACTGCCATGACACTCgatataatataaacatagcCACTAGCTAAGGTATGTgcatgcacaaaacacattATGATGGGTGCATTATCTGTTCCCCAAGAAGCtgacatttctcacacacacacacttcaggatTATGAGACTAAAAAGGCGTTTCACAGATAACCAACACAAAAACAGCAGAGGCATGTTCAGTTAGCAGCAAACTTACTTTCCAAAACTAATTTAAACCCGAGGCTCTCTGCTAGGCATGTGCCGATCATCACttgtatgtttaatattaatgtcaCAAACTTTCGTTTCATACTGAAGATCTAATCTTTAAGCAATTTTTCTCTAATACAATCGAGTGACATCATAAACCGTGATAAAACGTACAATACGAAAACCTATTATTGGCACATGCTCACTTTTGAGAACAAAAACAGAGAGGGATGTCTTGCACCTAAAACTGCGAGAAGCTTTCTTTCGGTTATTGCTGCGGCGTGGAAGACACAACTGTCATACACATCTGTGTGTCTCACATATCGTAATGATGTAAACCATGACAGCAAGTGAGGCAGTTATTGCACTGTGAACGTTGTGGCACATGCTTGATCTTGATATTTCATTCATCTATTTACCACGTCCTTCACTGATGGTGATCTAATCACACACCACTAATAATGCCTTACACAAAAACCATTTGCTCAAGCTTGGATGGTGAAAGCTGAAAGCATCTCGATATTTAGGGAGCACTCGTTTAGCTGTGCTGCTCGGctcctcccaaaaaaaaaaaagccattataTGGAACAGGAACACGCTTCAGTTTGTTGGAAGTTTGTTTTCTGATTAAATTACCTGTTCAGAGCGAGATTCTGAAAGGTTCAGAGATGCTAAGACCCTGGTGTTTGCTCCACTGGTGAACCTCCAGGGTCAGATTTATTACAAACACAGAGCAACggggacaaaaaaacaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252548 True 1388 lncRNA 0.39 2 18846216 18898291

Neighbor

gene id symbol gene type direction distance location
clpp clpp,LOC107753176,LOC107590418,LOC107689627 coding upstream 10015 18829293 ~ 18836201 (+)
yipf2 yipf2 coding upstream 44399 18793304 ~ 18801817 (+)
tnrc6c1 tnrc6c,LOC107724432 coding upstream 148623 18633498 ~ 18697593 (+)
sept9a sept9,LOC108411966 coding upstream 287324 18472384 ~ 18558892 (+)
LOC113528424 NA coding upstream 395055 18449286 ~ 18451161 (+)
engase engase coding downstream 40280 18938571 ~ 18954755 (+)
coil NA coding downstream 73107 18971398 ~ 18980644 (+)
rab11fip4a rab11fip4,rab11fip4a,LOC108274243,LOC108436969,LOC107601264,LOC107654480,LOC107719982,LOC107688103 coding downstream 83582 18981873 ~ 19026526 (+)
suz12a LOC108278724,LOC108436970 coding downstream 184307 19082598 ~ 19097768 (+)
caskin1 caskin1,LOC107654476,LOC107721515 coding downstream 242135 19140426 ~ 19270909 (+)
G213221 NA non-coding upstream 132590 18706417 ~ 18713626 (+)
G213191 NA non-coding upstream 280434 18517313 ~ 18565782 (+)
G213192 NA non-coding upstream 311872 18530359 ~ 18534344 (+)
G212903 NA non-coding upstream 382193 17964793 ~ 18464023 (+)
G212899 NA non-coding upstream 863410 17980998 ~ 17982806 (+)
G213314 NA non-coding downstream 60739 18959030 ~ 18960740 (+)
LOC117598754 NA non-coding downstream 181171 19079462 ~ 19082157 (+)
G213475 NA non-coding downstream 208919 19107210 ~ 19161120 (+)
G213498 NA non-coding downstream 373040 19271331 ~ 19271589 (+)
G213499 NA non-coding downstream 373308 19271599 ~ 19271813 (+)
zgc:163143 NA other upstream 411688 18425179 ~ 18434528 (+)
LOC113528171 NA other upstream 430869 18409841 ~ 18415347 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other upstream 503256 18183693 ~ 18342960 (+)
cenpx cenpx other upstream 1113210 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 1733060 17087284 ~ 17113156 (+)
smim22 NA other downstream 16435 18914726 ~ 18919942 (+)
G213491 NA other downstream 245783 19144074 ~ 19145240 (+)
gng13b NA other downstream 403063 19301354 ~ 19313218 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other downstream 474945 19373236 ~ 19455034 (+)
LOC113528458 LOC108275785 other downstream 974785 19873076 ~ 19911732 (+)

Expression


Co-expression Network