G213314


Basic Information

Item Value
gene id G213314
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18959030 ~ 18960740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252634
GGTGTCCACGATTAAGTCCAGCTGGCCGTTATAGACGGTCACATTCACTCCTGCAGCCAAAAGCTCATCAACAATGTCGATCACAGGCTTCATAAAGTCTCCGGACATGCTGGAAAACACCTGTTCAGACTGGCctaggctcacacacacacacacacacacacacacacacacacacacagcacagcttgAGTAAGACAATGCAGCACAATACAGTAACACAACAAGTGTTTGTGTACTTGTGGACGTCTCTGACCTGTTCTACGACGTTCTCAGTGACGCTCCACAGCTGGGTGGCGGTGTCGTACTGTTCCTGCTCAATAGCCTTCTGAACGTCTTTAGCCGCTCGCATCACCTCACCCAGGCCAAAATCATCCAGCagggactacacacacacacacacacacacacacacacacacacacacacacacacacacaaaa

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252634 True 443 lncRNA 0.50 2 18959030 18960740

Neighbor

gene id symbol gene type direction distance location
engase engase coding upstream 4275 18938571 ~ 18954755 (+)
rgs9a rgs9,rgs9a,LOC108278703,LOC108438013,LOC107590386,LOC107721500,LOC107719993 coding upstream 59049 18877674 ~ 18899981 (+)
clpp clpp,LOC107753176,LOC107590418,LOC107689627 coding upstream 122829 18829293 ~ 18836201 (+)
yipf2 yipf2 coding upstream 157213 18793304 ~ 18801817 (+)
tnrc6c1 tnrc6c,LOC107724432 coding upstream 261437 18633498 ~ 18697593 (+)
coil NA coding downstream 10658 18971398 ~ 18980644 (+)
rab11fip4a rab11fip4,rab11fip4a,LOC108274243,LOC108436969,LOC107601264,LOC107654480,LOC107719982,LOC107688103 coding downstream 21133 18981873 ~ 19026526 (+)
suz12a LOC108278724,LOC108436970 coding downstream 121858 19082598 ~ 19097768 (+)
caskin1 caskin1,LOC107654476,LOC107721515 coding downstream 179686 19140426 ~ 19270909 (+)
dctn5 dctn5,LOC107579625,LOC107590401 coding downstream 379639 19340379 ~ 19348424 (+)
G213244 NA non-coding upstream 60739 18846216 ~ 18898291 (+)
G213221 NA non-coding upstream 245404 18706417 ~ 18713626 (+)
G213191 NA non-coding upstream 393248 18517313 ~ 18565782 (+)
G213192 NA non-coding upstream 424686 18530359 ~ 18534344 (+)
G212903 NA non-coding upstream 495007 17964793 ~ 18464023 (+)
LOC117598754 NA non-coding downstream 118722 19079462 ~ 19082157 (+)
G213475 NA non-coding downstream 146470 19107210 ~ 19161120 (+)
G213498 NA non-coding downstream 310591 19271331 ~ 19271589 (+)
G213499 NA non-coding downstream 310859 19271599 ~ 19271813 (+)
G213678 NA non-coding downstream 509122 19469862 ~ 19471356 (+)
smim22 NA other upstream 39088 18914726 ~ 18919942 (+)
zgc:163143 NA other upstream 524502 18425179 ~ 18434528 (+)
LOC113528171 NA other upstream 543683 18409841 ~ 18415347 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other upstream 616070 18183693 ~ 18342960 (+)
cenpx cenpx other upstream 1226024 17698673 ~ 17733006 (+)
G213491 NA other downstream 183334 19144074 ~ 19145240 (+)
gng13b NA other downstream 340614 19301354 ~ 19313218 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other downstream 412496 19373236 ~ 19455034 (+)
LOC113528458 LOC108275785 other downstream 912336 19873076 ~ 19911732 (+)
LOC113528304 evc2 other downstream 973084 19933824 ~ 19953286 (+)

Expression


Co-expression Network