G213475


Basic Information

Item Value
gene id G213475
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19107210 ~ 19161120 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252813
TTGGCAAATATTCTGCTGCGCTCTAACAGATGTTTTCAGAAGGCACAAACACAAATGAGGTACAAAGAAGATACAAATTCACTGAACCGTCACAGTTTGATAAGCGGCGCTACGTGTCAGGTTACGTGTTCAACAGCATTATAATAGCTAAGTACCTTTTATAAGTTTTTAAAtaactgaacaattttttttccaatattgACTCACTGACTAGTGTTGATCTGTGTCCAAACTGGATTTTATTCTTCCGACTTCTCATTCTATAAATGACAACTGATAGAATTGCACTACTTTTCTCATCTAGCAAGTAAGTAAGCTTGTAATTTAGCAagtttgttcatttcatttttggacaGTAGATAATTGTACTAAGTAGTCAGGGTAAactttgttgctgtttttttttttttttcaaaaatgtaataatttacaGTAGCCATCACCACTAATCAAGAATGTCACTATGTAAAAGAGAACAATTTTTCTCATAAATCAATCAAAATTGAGGTTGCTAAATGTATGCACGACATTCACATTTGTTTTGCACCAGTTTCATTTCAGTCCAGATCCCAgagattagcattagcatggaGAGAAAATCATTATTACTTCAGAAGctcacgagagagagagagcgagagagtgagagtgagaacgAAGGAAGCAACCTCAAAGATCTGCATCTGAGCTTGTGTGGTAAACCAGCATGCTTTGCAACTCACGGCTGCACATACTATATCTATAAAAACCTCAAACACACCTGTTACTATGAGGAGAGTGCAAACGTTGACTCTTTTTAGGCACAAACCATAATGGTCgaaaataattcatttcacCTGTAAATCTTATTTGGATAATCAGAATAAAGTCcttattattcttttctttagTCGTACTTCTCTTTAGGACTGTTTCTTAATATGCGTCTATGCATTCTTGTCTACGTTAATGTTcttttgtagatttaaatggatttattttttaaacagcgAATGAGTATTCCTGATCAAAATTAGCAAACTGGTTATATCTTTGGATAAGCATAAGGCGTATACAGACCCTTTTGTTTTGATCAGTGAAGCTAGCTAGACTGCTGGATGTTTATAACTTATTCTaacgtttttgtttttgttttgtaatctGAGCGGAGCTCTGTTGAAAATGAGCTTCCTAGGGGACATCCACCCATACATGTCAGCTGTGTAAACAGTGTAGGTAACCATGGGAGTGATACAGTATATGTGATGTCACTGCTGACCAGCTTGGCAAGGGAAAGGTCATCATATCAAATTCGTAAGAAGGAGGCTCTGGTTAGCTAggacagctagctagcaatcATATCTTGTGCTGACTTTAGCGAGTTTGTCACGTTAGGGTCGTCAGTGCATGTATCTTTTCTGTATCACAAGTAAAACATTAGCTGTTGGCTCATTAATGTTTAAATCTTAAAGCTGAAAGATGTTAGCATTTACAATAAAGGCAAGTACACAGCACATCTCTCATTGTTCTTGTGTTCTTCTGAGTTTGTTCTTACAAGTTAACCTGGCAAGAACTTTCTTTACGTTCCTGGTATTGACGAACCACTCAATGTTACAACTCAGTCAAGCTTCACTCCTATAGGTCACCCAGTACCCCAACAAatacatggttaaaaaaaacttaaataaatcatgtgcTTGGTGTTACAATAAAATAGTGGATGCAGGACTCTAAcagggtttttaaaaaaaaaaaaaaaaaaaaaGAGGGGGGGG

Function

NR:

description
PREDICTED: proteoglycan 4-like isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252813 True 1754 lncRNA 0.36 2 19107210 19161120

Neighbor

gene id symbol gene type direction distance location
suz12a LOC108278724,LOC108436970 coding upstream 9442 19082598 ~ 19097768 (+)
rab11fip4a rab11fip4,rab11fip4a,LOC108274243,LOC108436969,LOC107601264,LOC107654480,LOC107719982,LOC107688103 coding upstream 80684 18981873 ~ 19026526 (+)
coil NA coding upstream 126566 18971398 ~ 18980644 (+)
engase engase coding upstream 152455 18938571 ~ 18954755 (+)
rgs9a rgs9,rgs9a,LOC108278703,LOC108438013,LOC107590386,LOC107721500,LOC107719993 coding upstream 207229 18877674 ~ 18899981 (+)
dctn5 dctn5,LOC107579625,LOC107590401 coding downstream 179259 19340379 ~ 19348424 (+)
ndufab1b LOC108258021,LOC102794063 coding downstream 194736 19355856 ~ 19362164 (+)
nsfa nsf,LOC108260232 coding downstream 582875 19743995 ~ 19768874 (+)
msx1a msx1,msx1a,LOC107682425 coding downstream 647843 19808963 ~ 19810891 (+)
LOC113528548 stk32b coding downstream 665530 19826650 ~ 19842682 (+)
LOC117598754 NA non-coding upstream 25053 19079462 ~ 19082157 (+)
G213314 NA non-coding upstream 146470 18959030 ~ 18960740 (+)
G213244 NA non-coding upstream 208919 18846216 ~ 18898291 (+)
G213221 NA non-coding upstream 393584 18706417 ~ 18713626 (+)
G213191 NA non-coding upstream 541428 18517313 ~ 18565782 (+)
G213498 NA non-coding downstream 110211 19271331 ~ 19271589 (+)
G213499 NA non-coding downstream 110479 19271599 ~ 19271813 (+)
G213678 NA non-coding downstream 308742 19469862 ~ 19471356 (+)
G213792 NA non-coding downstream 469771 19630891 ~ 19631311 (+)
G213834 NA non-coding downstream 503584 19664704 ~ 19706850 (+)
smim22 NA other upstream 187268 18914726 ~ 18919942 (+)
zgc:163143 NA other upstream 672682 18425179 ~ 18434528 (+)
LOC113528171 NA other upstream 691863 18409841 ~ 18415347 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other upstream 764250 18183693 ~ 18342960 (+)
cenpx cenpx other upstream 1374204 17698673 ~ 17733006 (+)
gng13b NA other downstream 140234 19301354 ~ 19313218 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other downstream 212116 19373236 ~ 19455034 (+)
LOC113528458 LOC108275785 other downstream 711956 19873076 ~ 19911732 (+)
LOC113528304 evc2 other downstream 772704 19933824 ~ 19953286 (+)
G214015 lyar other downstream 817194 19978314 ~ 19981380 (+)

Expression


Co-expression Network