G213549


Basic Information

Item Value
gene id G213549
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19023758 ~ 19072985 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU252898
acccacctttaatgtgatatagcaaccaataaaattcaagtgaaaaacaaataaaaaagaaaagaaaaaacttacaataacctagttgtgtaagtgtgcacaccattttataatggggcatgtgactgtgctcagaatgaaccaatcacattcaaactcatgttcagtAGTAATGCTCATACATCTatcatcagtgaagtgattctgattaaccccaaataaagatcagctgtttctgtgggATTTTTTGGTTTCAGTCAAGTTCTgaaataattctaaaagatatgtttggctcAAAAACAAGATAGCTTATAACTCAAAgaatggtgaagcatggtggtggcagcattatgctatggggctgcttctcttctgCTGGGACAAGTCAagatcgcctctggcttgctcgttacggataaattgaaattaaaattctATATCCGGTGTTCTGTAAAACTGTTTTGTGACAGTGCCAtacaattaaaattgaattgaactgaattaaatagCTCCAAAttccaatctattttggcacagaAACCTGCaacctctgttagacagctgaagatgaagaaaaatttcactttCCAGCACAATAACGAATCCACGAAAGCACAattccaagtcaacaaaggaatgacttcagaagaagaagatcagcattttggaatggcccagtcagagtccagatctaaatcctatcaaaaacctgtcgaatgacttgaagagggctgtgcacaagAGATCCCCTTGCAATCTGATAGATCTTGAGCGTTTTTGCAAGGAACAGTGGAacaaaattgccaaatcaagatgtgctaagttggtagattCGTACTCAAAAAGATCGAGTGTATTACAAGCAGAAGATGCTtgaacaaagtattagttaaggggtgtgtatacttatgcaaccaggttactggacattttttcttgtttttttttttttgttttttttgctaaaacaattctatttgtttttcactttttgttgGTCACTATATCgcataaaatgtggaaaaaagatctgacatgatttatcttggtttcatttttttctaaaaaaaccTCCCAATTTAACaagagtgtgtagactttttatatccactgtactagagatatgataaaatattagcATGAACACATTGCAGTCCAAACtcctgtcagggctgctgttatagaaaatgaatctacaccttctgaccaatcagaatggagtattcaacagtgctgtagtataataaGGATTAAGTCATTGGTCAATTTTATCAGATGTGTCCTGTAGGAGGTATGGAGGagtttttagttcagtttaacTTGCGGATGGACTGACGAAAAATGTCACTACTGGTTATCGACAGCcaaaccgagagagagagagagagagagagagagagagtgagattaTATTTCAGCAGCACCACCTAGGGTAAGCTTTAAACATTACAGCATTGATAGTCACAATGTCCAGCCCAATAAGATAATTCCCtttcttacatttattttactgaaatattctGATGAAGAAGACATAGCCAATGAATTATTCACTTacagatccatccatccattttctgtaccaggCACAAGGTGAGGGAACTCTCTGGATAGGGTgtcaacccattgcagggcacaatcacacacagtaTGGAAATGCCAATGGCTAACCACTAAGTCACCGTGTCCCTTCTGACATACAGATATTCGAATCAATTCATTCTAAACCTATAATACATTTGTGATGTACCtgaaatgtacactatatggccaaaagtttgtggacacctgaccatcacacccatatgtgcttgttgaacatcccattccagatttattcccccttttctgttataataagctccactcttctgggaaggctttccactagattttggagggtggttgtggggatttgtgttcattcagccacaagagtaacattagtgaggtcaggtactgatgtgaagtgaggaggtctggggtgcagtcagcttttcaattcatcccaaaggtgttcagtggggttgaggtcagagctctgtgcaggaaactcaagttcttccagtccaaccttctcaaaccaggtcttcatggagctcgctttgtgcacaggggcattgtcatgctggaacaggtttgggcctcttagttccagtgaatggaaattATAATActacaacatacaaaaacattctagacaactctgtgcttccaactttgtggcaacagttcggagaagaaccacatatgggtgtgatggtcaggtgtccataaacttttggccgtGTATAAGGTTCTATAAAGCAGCATTTTACAAAccaccaaaataaaaacaacacgtcaataaaattaaaacgcCAAATCATGCCAATGCAAATGCTTTATTATAGTTTTCCATTTGCAGTTTGTCACTAGATCATTAAcattgatttcttttctttttttatataacaaaaacaaaaaagtttagCCTGTGTGTGGTGACAGGTGAGCAACCATCTATcaaatcagtacaaaaacaaacattgctAAAATGATCAGTTAGTGAAAGTGTTTTGTTTggcatttacaaaataataataataataataataataataataataataataataataataaaacataattaccTGTATTGATCTATGTGCTGAGTTATTAGTGCAAACACGGGACTTCATTTGCGCAAATATCTAATGTACTGATGAGACATTATTCCTAAGTGCCTAAAATAAGTTCAATTAATGATAGCACTTTTTTCATCTTAGTATATGAGGATTCAGCTATAATTACAAAAAACCTCTTTGCTGTATAGATcagcctaaacacacacacacacacacacactaatgcgtGAGCTCTAGAGAATTACAGTAGGCTTTTCTCTGATATCACTACATCTTTACAACAGCGAAATGgtgctaatgttaatgaaaatgtCTCATACATGcctcatacatttttttttaaatcataaaacacaaaacaaaacaaaaacaaccatcATTTGCTCTTTAgctaggatgtgtgtgtgtgtggtacgtACATACAAACTGTTTGTACAGTTTAGAGCAATGCTACAACGCAAATAAGTGAAGgaagtatatatgtatatacaaaaaAGTTCCTAGTAAAATCAGACGTTattaaaagacagaaatatagGCACAAACGTATGACAGACTAATCACATGCGATTTGTGCAGTAGTGTGCGTTTCTGTGTACAGCAGTAATCTGAACTACACAGTCATCTGCAATACTGTCATTCacgtaacattttaatatataaataaaaaaacaaatgttacacGGTGATAAAAAACAGAGGTGATACATTCATGGCATTTACAGTGAGAGCACTTTTTCCAGTTGAACATTTGATTGTATATTCAAATATGACTGATTATGAATATGAGTATTCATCTTACCAAAAGGGACACGCCCATTTTTAAAAGGCGTACACATGGCGTACAAGGCATACACATGACCATAAATGAGCCGATTGCACTGCTGTGTCTCGTCTTTAATCGCATTAGCCTCACTAGATAGCTAAAACAAGCTAGAATCGAACCTTTCTTTTTGCAAGAcgcatgttttttatttcacttgctATAGTTTACTATAAATAAGCTCGTGTTTTAGCCTGTTGATGGGTTATGGGTTAGCATATTTACTAAAATGCTAGTTTCTTGGTATGTTCACAATGTTGTAATTACAACAATTACGAAGTGACAGCTGCGAAATTCAATTCAGTATAGATGGGCAATACCACTGACTTTCTTTTTCAAGCTAATAGTAATATCGAGAGTATACTGATACCGATAAATTTGTGAGTAgtgagaattttaaaatatggcCATCATGATTTATGTATCTGAATTATCAAGGAGGAATTCATTTAGATTAAATTAGCAATCAAAGATCACAGCGCTCGACTCAGTTTAAATAGACATGACACCTTAATGAGAGGCATGACCACACTgaagacatacactatatggccaaaagtttatggacacctgaccatcacacccatatgtggttcttctccgaactgttgccacaaaaaaaaaaaaattccccgaAGGTCCATTCTACAGTCACGTGCAGCTATATCAGGGGTCCAAACCTTTCTCATCTGGCGTAAGATGCAAAAGAACcctgtctaataataataataataataataataataataaaaaggtcTAATAACTGATTATGGCTGGCGCTGCCTCACTGAAGCAGCagtgaaccttttttttatagGAGCGGATtcatttctatacattttaCAACAGATTTTAAACTCTTATAAACCTCAAGACGATGGAAATCTAATGGAAATCATATTTCTTCTGTTAACGTGACATATTTCAGAGTGCAACATGGTGTTCTAGATATTGTACAGCTAGATTATGAATTTATATACAGGGATTAGATTGGATTTGGTACCAAATGAGACTACATGTACCTGTGCATGCTGACGTAGTAAAAAACAGATGGCAGTAAGAAGCAGGCTGATGGATAGAGCAATGTTGTCTTTTAAGTGTTTCATATTGGTTCACTGACATCAGCGGCTGTTTAGTgatggaaaagcagagaaatggTTCTAGAATAGACGTTGGCAAAGGTGCTATATGGTTAGCAAAGTGCTATTTGTCTTCTGCTTTATTGTCCCTGCTGCTTTCAGCCAATAACAACAAACCATCCTGGACTGATTTTAGTGAGGAACAACATCACGTAGCAGTGTGAGATATCTGACGCAATCGAAACAGTTCTCAGTGCAACTCGACTATTAGACTCGAGTGGAGTGTATGTACACAATATTGAGTGTATAACGAAGAATACATTTTACATGATATTCTAGAtatgtcatttgttttttttcctgatccaGATGTGAGGTGGAAATGTTGGTGTGCCTCACTCCCCCAGCCACAAGGTGGCAAAAAATGCCAACCTTTACTTCTTCAGGACAGGTCTAGTGCTTGATTTCCAGGATGGAGGGATTGTGGTCCAGTATAGCCAGGATGATCTTATCCATGTACTGCCGGAGGCGGAAGTTGATTTCCTCCTGCTCCTTCAGAGCCTCGA
>TU252899
agggtggctgtggggatttgtgttcattcagccacaagagcattagtgaggtcaggtactgatgtgaagtgaggaggtctggggtgcagtcagcttttcaattcatcccaaaggtgttcagtggggttgaggtcagagctctgtgcaggaaactcaagttcttccagtccaaccttctcaaaccaggtcttcatggagctcgctttgtgcacaggggcattgtcatgctggaacaggtttgggcctcttagttccagtgaatggaaattATAATActacaacatacaaaaacattctagacaactctgtgcttccaactttgtggcaacagttcggagaagaaccacatatgggtgtgatggtcaggtgtccacaaacttttggccatatagtttatatagAGCCATGCTGAAGAAAGTCCACTTAAAGCTACCCTGTATTTTATAACTCGCCCTTGTCGGCTTCTCCTCACGACATCATGTGACTGTACACTTCCAACCAAAAGGGAGAAATGTGCATGGACTATACACATATTGATCTTGCTGATAAAGTCAAGATGTGTATAGTCCAATACTTTGAATTACATAGCTACCGAGTCATATTGTGCTAAGTAGCTAGCACACTAGCAGAATAAAATAAGTCCAGTCAGCTGTTATGGACAGATCTAAACCccacaaatgaaatattaagtattttattgcTGAAAGGTCAGTTAGTCTTTATTTTACTTACTGACACACAGCTTCCTCTGATTTCATATTGAAATGTAATTGGTGCTTATTAGCTGTAAGAGGAATGCTGTAGGTGTGTAAGTTAAATAGTCTAATGTACTTTTACACACCTGTATTGTCATGTCTAATTAATATTCTTACTAGAACAGCAACCACATTTTCCTTATTTGAAAAACGAGgattagaaaaataatttttttttattttttgtgaactacgcagaaagagacagaggccTGTCTTGGGGTTCATTTCAACATCTTTTACActaatgtatgaaaataatcttAGAATTTACACACATCCtgtatctttctttcttaaaataaagaCGGATGTATCCAGTTCCGCTTGCAGACATACAACAACCTGTAAACGCTACGTTTTGTGCAAACGTGTAGCCATGTGCCGATCATCGGTTAAACGATACAACAAGCATAATATCAAAATCCGAAAAGCATCACAATGTCATCACTTCTCCTAAGCTGATATCGGAACGAGGCCACTCCATATTTTTGGACAAGTTCGAAGGGATATTAAAGGAGGCATGTGTCCCATAATTCTGTCCATTTGCCAGACTGAGGAAGAATACgcacaaaaatatttcttagcTACTTTGATTAGCACCGAGTAAATGTATGCTAGTTGCTGTTGAGTTGCCTGTTAAATGTAGCTTCAGAAACATGACACATTaaccagcacaaaaaaaaagaaaagaaaaatctcacaGATGAACACGCCATTGAAAACCAAGGCGACTAGAACTAACACTGAATCAGGAATTAGCGATTTAGGCGACTGATACGTCTTTGTGTTTGTCAGCTGGCAGAAATCATACCCCTGCTTGCatttagctaactaacatgaCTAGACAAGCAGTGTCTGTAAGACGCTAAGCTGTTTGCACTTCACTACAAGAGCTAACTGAAACCACATAGGCGCAATCACACAGGTGCAGCTGAACGTACAGAAATGTTCTGACAATACTGTAAACAATGCTTAAAAGTTAGacaattcaattttttaaaaaaatcctatcgGCACATGTCTATTGGTCTGTCAGTGAACTCTCATTACGTAGCTTGTGCTttggtttattttcttgttCATCTTTAATTCTATTGCATTTATTCTATGAAATAGttttatgtatatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252898 True 5098 lncRNA 0.37 2 19023758 19031157
TU252899 False 1887 lncRNA 0.39 4 19025072 19072985

Neighbor

gene id symbol gene type direction distance location
scpep1 scpep1,LOC107654482,LOC107601266,LOC107720074 coding downstream 54977 18957049 ~ 18968781 (-)
rogdi rogdi,LOC107719995,LOC105899978,LOC107688116 coding downstream 87249 18922136 ~ 18936509 (-)
cog1 cog1 coding downstream 107985 18902663 ~ 18915773 (-)
gna13b LOC108278714,LOC108438014,LOC107721501,LOC107719992,LOC107654495,LOC107590387,LOC107688114,LOC107601276 coding downstream 151612 18851456 ~ 18872146 (-)
aldh3b1 aldh3b1,LOC108258475,LOC108444046,LOC107698763 coding downstream 180025 18836193 ~ 18843733 (-)
trnat-cgu_6 NA coding upstream 3284 19076269 ~ 19076340 (-)
crlf3 crlf3,LOC107688102,LOC107654479 coding upstream 34201 19107186 ~ 19126331 (-)
traf7 traf7,LOC107590399,LOC107719978 coding upstream 200077 19273062 ~ 19288073 (-)
rpusd1 rpusd1,LOC103399497 coding upstream 276398 19349383 ~ 19354576 (-)
cacng3b LOC108274869,LOC103359167 coding upstream 398699 19471684 ~ 19504307 (-)
G213407 NA non-coding downstream 174611 18792435 ~ 18849147 (-)
LOC117599003 NA non-coding downstream 947371 18070785 ~ 18076387 (-)
G213028 NA non-coding downstream 980479 18041404 ~ 18043279 (-)
G212891 NA non-coding downstream 1123488 17900070 ~ 17900270 (-)
G212871 NA non-coding downstream 1137516 17886012 ~ 17886242 (-)
G213716 tnrc6a non-coding upstream 344199 19417184 ~ 19422415 (-)
G213879 NA non-coding upstream 590352 19663337 ~ 19663762 (-)
G214159 NA non-coding upstream 947567 20020552 ~ 20056144 (-)
G214325 NA non-coding upstream 1363067 20436052 ~ 20438834 (-)
G214331 NA non-coding upstream 1372538 20445523 ~ 20445748 (-)
si:dkey-204f11.64 LOC108274053 other downstream 196024 18823471 ~ 18827734 (-)
LOC117598999 NA other downstream 646395 18375684 ~ 18377363 (-)
mettl23 mettl23 other downstream 969542 18050735 ~ 18054216 (-)
tsen54 tsen54 other downstream 1151177 17811613 ~ 17872581 (-)
G212750 LOC100136012,LOC107575789 other downstream 1348474 17674827 ~ 17675284 (-)
rbbp6 rbbp6 other upstream 356232 19429217 ~ 19448559 (-)
lyar lyar other upstream 867369 19940354 ~ 19984149 (-)
slc2a9l2 slc2a9 other upstream 966802 20039787 ~ 20138213 (-)
hs3st1 hs3st1 other upstream 1132354 20205339 ~ 20213629 (-)
spry1 spry1 other upstream 1827072 20900057 ~ 20905271 (-)

Expression


Co-expression Network