G213984


Basic Information

Item Value
gene id G213984
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19912139 ~ 19912375 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU253387
GAGCGTGTTTTATTTTAGtacttaaaaatacatattgcCAGCTCATACCACAGAACAATTCAGAATTAAGCAGTtacaaaaaaatctgagaaaatcTGGTTGCAATGTGTTAGTTCAGTGTCTCCAGCTCAGACCAGAAGGGCATGAATCTTTGAATAtattctgcatgtgtgtgtttggatcaTAATGCTTGCTAGGTGCAGGTTCTTAAGACTGTATGAATGGATGGGAGTTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253387 True 237 lncRNA 0.37 1 19912139 19912375

Neighbor

gene id symbol gene type direction distance location
mcm7 mcm7,LOC107716516,LOC107744067,LOC107665623 coding upstream 11155 19888315 ~ 19900984 (+)
LOC113527852 stag3 coding upstream 26584 19860406 ~ 19885555 (+)
LOC113528548 stk32b coding upstream 69457 19826650 ~ 19842682 (+)
msx1a msx1,msx1a,LOC107682425 coding upstream 101248 19808963 ~ 19810891 (+)
nsfa nsf,LOC108260232 coding upstream 143265 19743995 ~ 19768874 (+)
zbtb49 zbtb49 coding downstream 51345 19963720 ~ 19996933 (+)
drd5a drd5,LOC107701828 coding downstream 88583 20000958 ~ 20002680 (+)
leprotl1 leprotl1,LOC103152176 coding downstream 518266 20430641 ~ 20438868 (+)
LOC113528524 LOC108258618 coding downstream 527066 20439441 ~ 20444946 (+)
ankrd50 ankrd50 coding downstream 834333 20746708 ~ 20779232 (+)
LOC117598770 NA non-coding upstream 119480 19784413 ~ 19792659 (+)
G213864 LOC108256143 non-coding upstream 196580 19698004 ~ 19715559 (+)
G213834 NA non-coding upstream 205289 19664704 ~ 19706850 (+)
G213792 NA non-coding upstream 280828 19630891 ~ 19631311 (+)
G213678 NA non-coding upstream 440783 19469862 ~ 19471356 (+)
G214012 NA non-coding downstream 55633 19968008 ~ 19970156 (+)
G214098 wdr1 non-coding downstream 159320 20071695 ~ 20181878 (+)
G214144 NA non-coding downstream 301031 20213406 ~ 20214427 (+)
LOC113528473 NA non-coding downstream 351823 20264198 ~ 20393220 (+)
G214369 NA non-coding downstream 559154 20471529 ~ 20471764 (+)
LOC113528458 LOC108275785 other upstream 407 19873076 ~ 19911732 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other upstream 457105 19373236 ~ 19455034 (+)
gng13b NA other upstream 598921 19301354 ~ 19313218 (+)
G213491 NA other upstream 766899 19144074 ~ 19145240 (+)
smim22 NA other upstream 992197 18914726 ~ 18919942 (+)
LOC113528304 evc2 other downstream 21449 19933824 ~ 19953286 (+)
G214015 lyar other downstream 65939 19978314 ~ 19981380 (+)
LOC113528520 znf518b other downstream 110134 20022509 ~ 20173352 (+)
nudt6 nudt6 other downstream 1099399 21011774 ~ 21024087 (+)
hopx hopx other downstream 1428041 21340416 ~ 21349086 (+)

Expression


Co-expression Network