G214012


Basic Information

Item Value
gene id G214012
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19968008 ~ 19970156 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU253415
TTTAATGTGAAAAGTCAGTAAAttaatgtgtcttttttttttttttgacactgaGATATTCATGGGGAgatgtacatataaaataagTTACATACAatctaaaacataaaaaaaaaaggaatataaaaGAGGAAACGTCACTGCAGTGGGATCTGCGTCACGATGTGTCTGAAAATGTCTTCTCAGTTCATACAGCACAATGACAATAACATCTGATATGCGGACACACAAAGACGTCACTGCGAAAGCCAAATGGTCTacaaaaacactgctgtttcaCAAGATTGGGAatagaattgtgtgtgtgcatattctCGCCTTTATCCGAGTAGTGAGATTATCATCACTACTCCCATAAACTGAGTGAAGAGAATCACAGGAGTGAAGAAGGACCACACAGGCCACAGTGCAATGTTAaaCTGAAGGAGGCTGCGATGAACGCGGCGGTGGTGATTGGTGGAATCGCGGGGTATTCCTGATCATAATGCTGAATTCCTTTGAACCACTCCAGATACACAATGCAGAATGTGGCGAGGCTCAGACACACACCCAGCAGCACCAGGCCCACATTAAACCACcaactgcaacacacacacaaacaatgaaaaatatgaagTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253415 True 618 lncRNA 0.41 2 19968008 19970156

Neighbor

gene id symbol gene type direction distance location
mcm7 mcm7,LOC107716516,LOC107744067,LOC107665623 coding upstream 67024 19888315 ~ 19900984 (+)
LOC113527852 stag3 coding upstream 82453 19860406 ~ 19885555 (+)
LOC113528548 stk32b coding upstream 125326 19826650 ~ 19842682 (+)
msx1a msx1,msx1a,LOC107682425 coding upstream 157117 19808963 ~ 19810891 (+)
nsfa nsf,LOC108260232 coding upstream 199134 19743995 ~ 19768874 (+)
drd5a drd5,LOC107701828 coding downstream 30802 20000958 ~ 20002680 (+)
leprotl1 leprotl1,LOC103152176 coding downstream 460485 20430641 ~ 20438868 (+)
LOC113528524 LOC108258618 coding downstream 469285 20439441 ~ 20444946 (+)
ankrd50 ankrd50 coding downstream 776552 20746708 ~ 20779232 (+)
dele1 kiaa0141 coding downstream 1065104 21035260 ~ 21044307 (+)
G213984 NA non-coding upstream 55633 19912139 ~ 19912375 (+)
LOC117598770 NA non-coding upstream 175349 19784413 ~ 19792659 (+)
G213864 LOC108256143 non-coding upstream 252449 19698004 ~ 19715559 (+)
G213834 NA non-coding upstream 261158 19664704 ~ 19706850 (+)
G213792 NA non-coding upstream 336697 19630891 ~ 19631311 (+)
G214098 wdr1 non-coding downstream 101539 20071695 ~ 20181878 (+)
G214144 NA non-coding downstream 243250 20213406 ~ 20214427 (+)
LOC113528473 NA non-coding downstream 294042 20264198 ~ 20393220 (+)
G214369 NA non-coding downstream 501373 20471529 ~ 20471764 (+)
LOC117598998 NA non-coding downstream 874985 20845141 ~ 20852594 (+)
LOC113528304 evc2 other upstream 14722 19933824 ~ 19953286 (+)
LOC113528458 LOC108275785 other upstream 56276 19873076 ~ 19911732 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other upstream 512974 19373236 ~ 19455034 (+)
gng13b NA other upstream 654790 19301354 ~ 19313218 (+)
G213491 NA other upstream 822768 19144074 ~ 19145240 (+)
G214015 lyar other downstream 8158 19978314 ~ 19981380 (+)
LOC113528520 znf518b other downstream 52353 20022509 ~ 20173352 (+)
nudt6 nudt6 other downstream 1041618 21011774 ~ 21024087 (+)
hopx hopx other downstream 1370260 21340416 ~ 21349086 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 1511866 21482022 ~ 21513040 (+)

Expression


Co-expression Network