lyar (lyar)


Basic Information

Item Value
gene id lyar
gene name lyar
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19940354 ~ 19984149 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU253468
tttctgtaaatctgctttgtgacagagTCAATAAAaatcattgtttaaaaaagtataaagaaTAAACATTGAACATAAGTCTGATACAAACTTGGGATAACAGGTTTGCAGTGACCAGCCAAGACAAAGTTGGATTTCCGGATTTAGCAACTTATGCTAATTCAGCGTCCAAAGCTTCGTATTAAacacaagattttaaaaaaaatcataaatttaatCTAAAGAAGAAACAAACATGTCTGCGCTATGACCTAATGAAAGCACAGCAAATGTTTTATGGGTATGTTTTGATTCCTCACCTTTTCTTCGGCTGAACAGTCACTATTGATTTGAAACGTCACTTCCTGCTACTGATGGCGCCGTCCTTTTATatttagatttttctcCCATGGAACCATAAGTGGGCTTTTGTTTCTGCACGGAAGtatTGGAGAATTCAAATACTTCTACGGCGGAACCGTAGGTAGGTTGGTGTTCCTGCACGGAAGGTAAATAGCGATGCATTGTGCTGCCGGCGTGGTTTTGAAATCTTGAGTGAGAGTGATCTTAagtgattattttttgtttttaattttaaatacttaaaagcAGTTCtagtgtgagtgaatgtgtgaaagGAGATAAAGTCTGGCCAGTTTTACAGTAATCAATGAGACAGTAGTGGTGAGGTGTGTTTGCataagtgagtgtgtatgagtgagtgagtgagtgagtaagtaagtgagtgtgtgtgtgtgagagagagagagagagagagagagac
>XM_026917108.2
TTAGAAATAGTCCAACACACAGCTTTCAAATGTATCCGTAAATTTagtttatgtaataaatatgttttcGGCATCTTTCATAAAAATTTAACTcgtgttattttatatagtatTGGAGAATTCAAATACTTCTACGGCGGAACCGTAGGTAGGTTGGTGTTCCTGCACGGAAGGTAAATAGCGATGCATTGTGCTGCCGGCGTGGTTTTGAAATCTTGAGTGAGAGTGATCTTAagtgattattttttgtttttaattttaaatacttaaaagcAGTTCtagtgtgagtgaatgtgtgaaagGAGATAAAGTCTGGCCAGTTTTACAGTAATCAATGAGACAGTAGTGGTGAGGTGTGTTTGCataagtgagtgtgtatgagtgagtgagtgagtgagtaagtaagtgagtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagtttgctCATCCACGATGGTGTTTTTCACTTGTAACGCGTGTGGAGAGTCTCTGAAGAAAGCCCAGATCCAAAAACACACCTCTATGTGCAGGGGATGCCAGGTTCTGTCCTGCATTGACTGTGGAAAAGACTTCTGGGGAGAAGACTATAAGAGCCATGTGAAGTGCATCAGCGAGGATCAGAAATATGGAGGGAAGAACTATGAGGCCAAAGCAAATAAAGGAGATGTGAAACAGCAACAGTGGATTCAGagagtccAGGCGGTGCTAGATAAGCCAGGTGTGAGTGCGCGACTACGCTCGGTGCTGCAGCAGGTCTCCACCTATGACAACGTCCCACGCAAGAAAGCCAAGTTTCAGAACTGGATAAAGAACAGTCTGAAGATTTATGACTCCAATCTGCAGGATCAGGTTTGGGAGATCTTCTCCTCTTCTGAAAATCTAGCCAATGAAGCCAAACAGCCTGAACAGGCATCGCCGCCAACAACAGCTGTGCAGGAAGAACAAGCGAAACccgaggagaagaaaaagaacaagagagagagaaaagaggagcgACAGAAGAAGAGTAAAAAGAAGCGAACGGAGGACGAGCAGAATGGAGAGAATGGTGTAGAAGAgccacagaagaagaaaaagaggaagcgGGCAGCAGAGGAGTGTGGCgaggatggagagagtgtgGAGAGAAAGACatcaaagaaaatgaagaaaaggaaagaggaggAGTGTGAAGAGAGCCAAAACCTGGAGGAAGTAGAGAACGAACAGGAAGCGCAAGAGGAGTCCAACACTAAAGggaagtTTAACTGGAAGGGAACAATAAAGGCGGTTCTCCGTCAGGCACCAGAAGAAGGCATTGCACTCAAGAAGCTCCGCAAAAAGgtTTTATCAGCATATTACTCCTTCAGCGCAGAAGACAATCATAAATCAGAGGAGGAGCTGTATTCTCTGTTCAACAAGAAGATGAAAAACCCCAAGTTTCAAATCCTGAAAGATAAAGTCAgacttgttaaataatattcCTTTTCTTTGTACTTTTGTTTCGACCAGAAGAGACATCTCATCTATCATGAATCCTGTTTTATGTCCCATCcgtgtgtatttttcttaaaataaatgttcttcATGAACAGA
>XM_034310035.1
ATAGTCCAACACACAGCTTTCAAATGTATCCGTAAATTTagtttatgtaataaatatgttttcGGCATCTTTCATAAAAATTTAACTcgtgttattttatatagtatTGGAGAATTCAAATACTTCTACGGCGGAACCGTAGGTAGGTTGGTGTTCCTGCACGGAAGGTAAATAGCGATGCATTGTGCTGCCGGCGTGGTTTTGAAATCTTGAGTGAGAGTGATCTTAagtgattattttttgtttttaattttaaatacttaaaagcAGTTCtagtgtgagtgaatgtgtgaaagGAGATAAAGTCTGGCCAGTTTTACAGTAATCAATGAGACAGTAGTGGTGAGGTGTGTTTGCataagtgagtgtgtatgagtgagtgagtgagtgagtaagtaagtgagtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagtttgctCATCCACGATGGTGTTTTTCACTTGTAACGCGTGTGGAGAGTCTCTGAAGAAAGCCCAGATCCAAAAACACACCTCTATGTGCAGGGGATGCCAGGTTCTGTCCTGCATTGACTGTGGAAAAGACTTCTGGGGAGAAGACTATAAGAGCCATGTGAAGTGCATCAGCGAGGATCAGAAATATGGAGGGAAGAACTATGAGGCCAAAGCAAATAAAGGAGATGTGAAACAGCAACAGTGGATTCAGagagtccAGGCGGTGCTAGATAAGCCAGGTGTGAGTGCGCGACTACGCTCGGTGCTGCAGCAGGTCTCCACCTATGACAACGTCCCACGCAAGAAAGCCAAGTTTCAGAACTGGATAAAGAACAGTCTGAAGATTTATGACTCCAATCTGCAGGATCAGGTTTGGGAGATCTTCTCCTCTTCTGAAAATCTACAGGCCAATGAAGCCAAACAGCCTGAACAGGCATCGCCGCCAACAACAGCTGTGCAGGAAGAACAAGCGAAACccgaggagaagaaaaagaacaagagagagagaaaagaggagcgACAGAAGAAGAGTAAAAAGAAGCGAACGGAGGACGAGCAGAATGGAGAGAATGGTGTAGAAGAgccacagaagaagaaaaagaggaagcgGGCAGCAGAGGAGTGTGGCgaggatggagagagtgtgGAGAGAAAGACatcaaagaaaatgaagaaaaggaaagaggaggAGTGTGAAGAGAGCCAAAACCTGGAGGAAGTAGAGAACGAACAGGAAGCGCAAGAGGAGTCCAACACTAAAGggaagtTTAACTGGAAGGGAACAATAAAGGCGGTTCTCCGTCAGGCACCAGAAGAAGGCATTGCACTCAAGAAGCTCCGCAAAAAGgtTTTATCAGCATATTACTCCTTCAGCGCAGAAGACAATCATAAATCAGAGGAGGAGCTGTATTCTCTGTTCAACAAGAAGATGAAAAACCCCAAGTTTCAAATCCTGAAAGATAAAGTCAgacttgttaaataatattcCTTTTCTTTGTACTTTTGTTTCGACCAGAAGAGACATCTCATCTATCATGAATCCTGTTTTATGTCCCATCcgtgtgtatttttcttaaaataaatgttcttcATGAACAGA

Function

symbol description
lyar Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Orthologous to human LYAR (Ly1 antibody reactive).

NR:

description
cell growth-regulating nucleolar protein

GO: NA

KEGG:

id description
K15263 LYER; cell growth-regulating nucleolar protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU253468 False 763 lncRNA 0.38 4 19940354 19984149
XM_026917108.2 True 1594 mRNA 0.43 8 19978416 19983561
XM_034310035.1 False 1591 mRNA 0.43 8 19978416 19983555

Neighbor

gene id symbol gene type direction distance location
LOC113528305 evc coding downstream 6634 19920704 ~ 19933720 (-)
cops6 cops6 coding downstream 22255 19913076 ~ 19918099 (-)
gpc2 gpc2 coding downstream 84151 19843001 ~ 19856203 (-)
LOC113528549 cytl1 coding downstream 115571 19816903 ~ 19824783 (-)
stx18 stx18 coding downstream 155959 19769988 ~ 19784395 (-)
wdr1 wdr1,LOC107717326,LOC106565198 coding upstream 158728 20142877 ~ 20158387 (-)
LOC113527919 clnk coding upstream 193116 20177265 ~ 20195513 (-)
rab28 rab28,LOC102780097,LOC106600633,LOC107712918 coding upstream 358324 20342473 ~ 20374576 (-)
nkx3-2 nkx3-2 coding upstream 399608 20383757 ~ 20386625 (-)
LOC117598840 bod1l1 coding upstream 410535 20394684 ~ 20400475 (-)
G213879 NA non-coding downstream 276592 19663337 ~ 19663762 (-)
G213716 tnrc6a non-coding downstream 517939 19417184 ~ 19422415 (-)
G213549 NA non-coding downstream 867369 19023758 ~ 19072985 (-)
G213407 NA non-coding downstream 1091207 18792435 ~ 18849147 (-)
LOC117599003 NA non-coding downstream 1863967 18070785 ~ 18076387 (-)
G214159 NA non-coding upstream 36403 20020552 ~ 20056144 (-)
G214325 NA non-coding upstream 451903 20436052 ~ 20438834 (-)
G214331 NA non-coding upstream 461374 20445523 ~ 20445748 (-)
G214493 NA non-coding upstream 794616 20778765 ~ 20781702 (-)
G214526 NA non-coding upstream 857282 20841431 ~ 20841634 (-)
rbbp6 rbbp6 other downstream 491795 19429217 ~ 19448559 (-)
si:dkey-204f11.64 LOC108274053 other downstream 1112620 18823471 ~ 18827734 (-)
LOC117598999 NA other downstream 1562991 18375684 ~ 18377363 (-)
mettl23 mettl23 other downstream 1886138 18050735 ~ 18054216 (-)
tsen54 tsen54 other downstream 2067773 17811613 ~ 17872581 (-)
slc2a9l2 slc2a9 other upstream 55638 20039787 ~ 20138213 (-)
hs3st1 hs3st1 other upstream 221190 20205339 ~ 20213629 (-)
spry1 spry1 other upstream 915908 20900057 ~ 20905271 (-)
fgf2 fgf2,LOC107717315 other upstream 1030290 21014439 ~ 21028081 (-)
slc16a2 LOC108279893,LOC107596364 other upstream 1252653 21236802 ~ 21272507 (-)

Expression


Co-expression Network