G214098 (wdr1)


Basic Information

Item Value
gene id G214098
gene name wdr1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20071695 ~ 20181878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU253520
AagtatgcaaaaataaaacctttgagAACCCCTGGTTTATACCATAGCAGGCTTTCCATATCATACTCCTGCATTTAAGCATATTAACCTCAGAATGCAGAGTGTGGGTTTATGGGTAAATGTGGTGTGCAGAGGCACAATGATGTACTAACTTGATGTTCAAGCATGATGCACTTGTCAGATGGAGTGTGAGAAACAAGATGGTGGACACTAGCTCCTAGACTACTAGCCAAAACACTGAGCTTCTACTTCACCACCACAAACCAGTACCAACTGTAACACTGCTGCTATTGACCCGATCGGTTTGACACCCCCGGCTAATGTTCATACTACATagaaaagcgctatctgccctcttccacatacctgagctgacagatgcccacgattggctagtgtcgctgtgattgacgggAGAAACAGTACaacatccctcccacccagagagcatgggcaattttgctccctttgggtcctggccatggatggctatGGCATCGTTAGAATTCGAGCTCTCAATGACAGGCCGAACATCATTATAACATCTGTTCTAAACTGTAATACTTAAGCATAATCATTCATTCAAGAAATAGCTTTTCTTACCATGAGCATATTTGAGTTATCTGGCTTCCATATTAAGAATTTAACatagtttttaattcattaatgtttttgtaaatacCCAGAATGCTTTTGCGTGCTACTAACCAAATGGCACTTTTCTTCACATGAACCTCCTTTTGAACATTTCAGTAGGACAGAATATAAATTGcaaatacagcacacacacagcattgtgCATAAAAAGTGTTCAGCTTTATTTCCAtcatttattatctttatttttattattattattattattattattattattattattattatcattattaatcacATCCACTCCAGTGAAAAAGTGGAGGCTTATATTAACACAATAAACATACCCACAATGACGGAGACAGAGGACAGAACACCATTGTCTCTCtcgcgcacacatacacacacatacacacacgctaCAGTAAATCTCTGGACTGTTCCATTTCTGCTTTACAACCTATTATTGCTCcctgaacaaaacacacacagatcctcTCAGCAGAATGCAGAAACAGACCACGGTCCATCATATAAGCGCAAGatacagtaagagagagagctAAAGCAAAACCTCCACCTGGTTAACAATATGAGACCGATCCATGACATAGCGTCGTGTCTAAAACATGACAACTCCTTATGTAAGAGTGACCTTCATGTTAGATCAGGAGCTGTGCTGtttcagaaatgtgttttataacttcagactgtgtgtgttttgtgtgtgttttgtgtgtgtttgtgtgtgtgtttgtgtgtgcgcgcgcatgcGTGAATGCATGAATGTTGGCCAGATGGAGGTCTCACTCTCGCGCCTCTGGAATGTCACACCTTTCATAAAGATGAGAGATAAGGAGCATGTTAAccgactgaaggcagaaaggagacacacacacacacacacacacacacacacacacacacacacaaacacacagaggcagcTGAGATTACTGGCACACAACCCTTAAAAACAAAGAGAGCGAGCGTGCAAGtctaagtgagagagagagaaagactgattCCATACAGCAGTCCCTGTCCCTGCTGATCCtgcaagagtgtgtgagagtgcttAGATTTTTAGTGTCCACTGTTTCACACACGCATCGTGAGAGGTCGTGACGAGCGTGTGTTCATCCAGCCAGGCCAAGCTGCTGATGTGGTGCAATCGATGAGCATCTGcaacgcacacaaacacaaaaccacagGAAGGCCATTTGTAAATACCGTAATTGTACAAGTTGATGTAGCAGCCATTTTCATTTCCTAAAATctcctcacctcctcatcaaatatgtaaatattcctaaatttcaaatgaaaagTTTTTGATCTAACCCATATACGTTgttgaatttattaataatttagcaTTAGACAGAGTAGTACAAACAGGAATTAGACAGAGTAGTACAAACAGGAATATTACTATTAggataacacaaaaaaaacataatacactataaatttaaacaacaaaaaaaaaataataatcacgcATAGTCTGGAAAATATTAAGTGTACGTTTGTGTACCAGGAATTTTGATCCTATTGTCAGGATTGGAGGCAGTCCAGACATACACCATCATGTCCATTCCTCCAGAGGCAAAGTGATCATTATCAGGACTCCAGGACAGACATACCACTTTAGCATGATGCCCATAGAACTCGTTCTTaaccCGATAACCATCAGCAACGGTGTATACGATGATGACTTTCTTCTCGTTTGAGACAGCGAGGAATGCCCCATCTCTGGAATACTGCAGATCAGTCACAGGGCCTTTGGTGTCCAGAACCTTCCCATCATCCTTCAAGGTGTTCCCCTGGACTGAGTAGAGATACACATTtccatcctacacacacacacacacacacacacacacacacacacacacacacacacacacatatatatatatatatatattacacccCAATAATCCTTGGccaattttctttatatattttttaaacattatataaaatctaaaattatttatatgtataataaaCTTCAGTTAAGACGTCTTTGTCTCAGTAAGGTGAGGTTCCTTAGGGAAGCCGAGCCACTTGTAAAAGCTTCTTGTTGACAAGAAAATTGCAAGTGAAACTGAAGGTGgtaaaatatgcaaatcagaaaCAGAACTCAGTGGTTCCTTACAGCTCCGCCCACTGCCACGGTGCCACCCCCGGGATGAATCGCACCCACTTCTGGCTCATAGCCCAGATTATCCAGAGTGAACACTTTCCTCTTATCCTTCAACAGCACCACCTACAGAAAAGAAACATGCAA
>TU253523
AagtatgcaaaaataaaacctttgagAACCCCTGGTTTATACCATAGCAGGCTTTCCATATCATACTCCTGCATTTAAGCATATTAACCTCAGAATGCAGAGTGTGGGTTTATGGGTAAATGTGGTGTGCAGAGGCACAATGATGTACTAACTTGATGTTCAAGCATGATGCACTTGTCAGATGGAGTGTGAGAAACAAGATGGTGGACACTAGCTCCTAGACTACTAGCCAAAACACTGAGCTTCTACTTCACCACCACAAACCAGTACCAACTGTAACACTGCTGCTATTGACCCGATCGGTTTGACACCCCCGGCTAATGTTCATACTACATagaaaagcgctatctgccctcttccacatacctgagctgacagatgcccacgattggctagtgtcgctgtgattgacgggAGAAACAGTACaacatccctcccacccagagagcatgggcaattttgctccctttgggtcctggccatggatggctatGGCATCGTTAGAATTCGAGCTCTCAATGACAGGCCGAACATCATTATAACATCTGTTCTAAACTGTAATACTTAAGCATAATCATTCATTCAAGAAATAGCTTTTCTTACCATGAGCATATTTGAGTTATCTGGCTTCCATATTAAGAATTTAACatagtttttaattcattaatgtttttgtaaatacCCAGAATGCTTTTGCGTGCTACTAACCAAATGGCACTTTTCTTCACATGAACCTCCTTTTGAACATTTCAGTAGGACAGAATATAAATTGcaaatacagcacacacacagcattgtgCATAAAAAGTGTTCAGCTTTATTTCCAtcatttattatctttattattattattattattattattatcattattaatcacATCCACTCCAGTGAAAAAGTGGAGGCTTATATTAACACAATAAACATACCCACAATGACGGAGACAGAGGACAGAACACCATTGTCTCTCtcgcgcacacatacacacacatacacacacgctaCAGTAAATCTCTGGACTGTTCCATTTCTGCTTTACAACCTATTATTGCTCcctgaacaaaacacacacagatcctcTCAGCAGAATGCAGAAACAGACCACGGTCCATCATATAAGCGCAAGatacagtaagagagagagctAAAGCAAAACCTCCACCTGGTTAACAATATGAGACCGATCCATGACATAGCGTCGTGTCTAAAACATGACAACTCCTTATGTAAGAGTGACCTTCATGTTAGATCAGGAGCTGTGCTGtttcagaaatgtgttttataacttcagactgtgtgtgtgtttgtgtgtgtgtttgtgtgtgtttgtctcagaCCTGCTCTTGATTGAGATCGAGATGATAACTGAAGTGGACTTACGCTGACAGTGCACTTAAATTTGAAGGGCGGCCCCTCGAAGAAGGTGGTGTCGTTATCGTCGCTGCCTGTGACGAGTCTGTACGGCCGGGTCTGTTTAAGGTCCACGCTGTTAATGACCTTACTGTGACCGACGATCTCACCCACTGAGGAGCCCGAGTCCCACAGGAACACTGCACcgaacctacacacacacacacacacacacacacacacattacttttcTGAAGAGATACATCAGATGTAGTGCTTTTGGTTACCAAAGATTCTGTCAGCAAACTATTtgcctttataccacagcgatgatgaattctcaattctgattggt
>TU253526
CTGCAAGCGACACTTTATGAATGAAGTatgagagtgtgtctgtgtgtgtgtgtatgtgtgtgtgtagcacactCTTTCTTTCAGTGTTCCCTTCATGCTCTGTTGGTCTTTGCTGTCATCCTTCCAGGGGtagcacgcgcacacacacacacacatacacacacacacacacacacacacacacacacgctaCAGTAAATCTCTGGACTGTTCCATTTCTGCTTTACAACCTATTATTGCTCcctgaacaaaacacacacagatcctcTCAGCAGAATGCAGAAACAGACCACGGTCCATCATATAAGCGCAAGatacagtaagagagagagctAAAGCAAAACCTCCACCTGGTTAACAATATGAGACCGATCCATGACATAGCGTCGTGTCTAAAACATGACAACTCCTTATGTAAGAGTGACCTTCATGTTAGATCAGGAGCTGTGCTGtttcagaaatgtgttttataacttcagactgtgtgtgttttagtgtgtgtgtttgt

Function

symbol description
wdr1 Is expressed in ectoderm; epidermis; nervous system; and solid lens vesicle. Orthologous to human WDR1 (WD repeat domain 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253520 True 2902 lncRNA 0.41 5 20141415 20144597
TU253523 False 1706 lncRNA 0.42 5 20141415 20152693
TU253526 False 508 lncRNA 0.44 4 20071695 20181878

Neighbor

gene id symbol gene type direction distance location
drd5a drd5,LOC107701828 coding upstream 69015 20000958 ~ 20002680 (+)
zbtb49 zbtb49 coding upstream 74762 19963720 ~ 19996933 (+)
mcm7 mcm7,LOC107716516,LOC107744067,LOC107665623 coding upstream 170711 19888315 ~ 19900984 (+)
LOC113527852 stag3 coding upstream 186140 19860406 ~ 19885555 (+)
LOC113528548 stk32b coding upstream 229013 19826650 ~ 19842682 (+)
leprotl1 leprotl1,LOC103152176 coding downstream 248763 20430641 ~ 20438868 (+)
LOC113528524 LOC108258618 coding downstream 257563 20439441 ~ 20444946 (+)
ankrd50 ankrd50 coding downstream 564830 20746708 ~ 20779232 (+)
dele1 kiaa0141 coding downstream 853382 21035260 ~ 21044307 (+)
LOC113528291 LOC108261075,LOC108434533 coding downstream 865383 21047261 ~ 21082014 (+)
G214012 NA non-coding upstream 101539 19968008 ~ 19970156 (+)
G213984 NA non-coding upstream 159320 19912139 ~ 19912375 (+)
LOC117598770 NA non-coding upstream 279036 19784413 ~ 19792659 (+)
G213864 LOC108256143 non-coding upstream 356136 19698004 ~ 19715559 (+)
G213834 NA non-coding upstream 364845 19664704 ~ 19706850 (+)
G214144 NA non-coding downstream 31528 20213406 ~ 20214427 (+)
LOC113528473 NA non-coding downstream 82320 20264198 ~ 20393220 (+)
G214369 NA non-coding downstream 289651 20471529 ~ 20471764 (+)
LOC117598998 NA non-coding downstream 663263 20845141 ~ 20852594 (+)
G214548 NA non-coding downstream 726950 20908828 ~ 20926678 (+)
G214015 lyar other upstream 90315 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 118409 19933824 ~ 19953286 (+)
LOC113528458 LOC108275785 other upstream 159963 19873076 ~ 19911732 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other upstream 616661 19373236 ~ 19455034 (+)
gng13b NA other upstream 758477 19301354 ~ 19313218 (+)
nudt6 nudt6 other downstream 829896 21011774 ~ 21024087 (+)
hopx hopx other downstream 1158538 21340416 ~ 21349086 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 1300144 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 1332695 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 1464202 21646080 ~ 21649152 (+)

Expression


Co-expression Network