hs3st1 (hs3st1)


Basic Information

Item Value
gene id hs3st1
gene name hs3st1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20205339 ~ 20213629 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU253634
tttttttcagtaatgtttGATTATAACGTGATTTCACAATTAGAAAATTCTCAGCTTATAAATCTGACATGATGACATGAAGGCACTGGTTACATAATGATATGCTCATAATGACTTAATCAGCTCTTAGGTGGAATTCCTTCatgttttttaatggaaaagttTCTCAAATATTGAATATAATGGTATCAAGTTTAAATACAAATCCACAGTGCACCTCTCCTTGAAATTATCTACACAAAGTGTGAACATTAAGTGGTTTCTTCTATGCTCAACACAAATAATGAGGCAGCgattaaagaaatataaagacATATTGGCTAATCTCTAACTGAAGCAGAACTCTGTAAACTGTCCATGTTCTGATATACTCACTGTAAAAAGCACAGGCTAAtgcacaaactagcattatagaaAACAGGCTAAtgcacaaactagcattatattaAACACGATAAagcaaactagcattatagaaCACAGGATAATGCACAAGCTAGCattattacagtaaacaggctaatgCACAAACttgcattatagtaaacaggctaaaacacaaattagcattataataaacaggataaaacacaaactagcattatagtaaacaggatAATGCACAACCTAGCATTATAGAAAAGAGGTTAAtgcacaaactagcattatagtaaacacgataaaacaaactagcattatagtaaacagtataaaacacaaattagcattatagtaaacaggctagtgcacaaactagcattatagtaaacaggataaaacacaaactagcattataagaAGGCTAAAATTTAAATCTGTATTATAGTAAACAGTTTATcttaaactagcattatagtaaattGACTAACCCTCAACCTAGAATAGCTAATCCCAACCATTATACCACACAAGCTCTGTATGTTTATTAGCCTTTTCAAAGCTGTTTTAACTTTTTGAATTCATTAACTGGCAAATGTATTTGTGACTACAGTCACagtgttaaaataaacacagctcaTTTGTAGTCTGTTTTATAAACTAGAATGAAATTAGATCAGTATTCTTGATAGCTGGCTACACGCAAGTTGCTAGTTGCTGATGAAACCGAATTCTGCAGTTCTAGTGCTTTTCATCAGTATTTATTCTCTATCTTAaacttttactgttagactgaGTCAGTGATTATGCTAAAATATGTATATGCTACACTGCATAagctaaatatatatttgtatttttatacagcagtagatttttattttttggatttaaaaaaataatctttctACATTAATGtgcattataaacatttctgaatttcc
>XM_026917223.2
ttgTGGCTGATACAAATGAAAGTCCGAGTGGAAAGAGCCGACGATCAAAACTTTGACCCGGGACAAAAGAGCGTGATTTATTCTGATCTGACAACCGGACGAacacgtgtgcgtgtgtgcgtgtgtgtgtgtttactgacgGGATCTATCAACGTGAAGcgatggtatgtgtgtgtgtgtgtgtgtgtgtgtgttgtaatggCGTGAGCATTCCTACATCTCTCCAGTCTACAGAGATATACAAAGCACCTCTTGtatgcagagtgtgtgtatgcttcaGTGGATGAAGGGATTCACCAAAGACATCTGTTCAGCAGAAAACTGAAGCCATCAAATCTGTGCAGATCTCCTTATGGCAGCTGTATTCTTCACCTTGCTACTCTTCCTCCCCTTTCCTCCATCCATTTCACCTCGTCCATTTGCAGAGACACCAGTGACCATCAGAGTGGACAAGAATGTTGTCCGCCAAAATGGTGGCAGCATTACAATCAACCAATCCCGTACCAATGACATTCAAAGCTCGAacacaataagacaaaaagaaagaaaactggaCCAAACCAGCAGTGAAACCAGCCAAAACAATGGAAACCTTACACGTCATCTGCCGGACATCATTATCATTGGAGTAAGGAAGGGTGGTACAAGAGCATTGCTCGAGATGTTGAGCCTTCACGACACAATCGCTACTGCTCAAAGCGAGGTTCACTTCTTCGACTCGGACATTAATTACCAGCAGGGATTCGAGTGGTACACATCGCAAATGCCACTGGCTCGACCTGATCAGTTGACAGTAGAAAAGACTCCGGCGTACTTCAGCTCTATTGATGCTCCAGAGCGAATCCTTCACATGAACCCTTCCGTCCGGCTCTTGCTGATTGTCCGAGATCCTGTGGATCGCGTTCTATCGGACTATACACAAGTTTTTCACAATCAgcttcaaaaacacaaaattccaCAGCCCATCGAGGACCTGCTGCTCCGAGACGGCGAGCTTAACCTCAACTATAAAGCTGTGAACCGAAGTGTGTATCACCCACATATGCAGCAATGGCTACAGGTTTTCCCACGTGACAGCTTTCATATAGTGGACGGCGACATGCTAATCAGAGACCCAttatcagaaatgaaaaaagtcgAACATTTTTTGCACCTCAAGCCACAGATAACCGaagaaaatttttattttaatcggACAAAAGGCTTTTACTGTTTGAAGGAACAAGGCCGCGAACGCTGCCTACACGAATCGAAGGGACGAACACATCCAAATGTAGCCCCAGAAATCCTGCAGAAATTATGCAAATACTTTCAGGAACCAAACAGGAAGTTCTTTGAACTAGTAGGTAGAACGTTTGATTGGAAGTGAGAATGGTTAgatggaaaagaaatgaaatgccATGGAAATACAATCATGCACAAAAACTCAACTGTTTAAGGTTGTGTAAAGATCATGAGAATGGATGAGGTGAAATTTTGCAAAGATTTGTACAAAGCTTGTTTGTGTGCAAATGCCATATACTTGGGAAGAACATTTGTGAAATGCTGTGAGAACTATGCTAACAGTTTCACCAACAAACCGGTGGTTGCAACTGCAAAGCAGATTGTGAGAATGGACAGAAAACAGGGAAATACTGGGAAGAAAGTTTGACTCAAAGTGAGAAGGCAGTTGAAATCCTGTGAAATCCATGCTAGTGCTTTTTACTAATCAAAAAGAAATTGTTTGTCATCATAACAAAGGATTATGCAAAATCCTGCAAAGAGCTCTGCGGACTCGTTACATTCCTCtaacagttactgaagaaaGTTGGAGAATTTcagcaaataaaaacagcaaaatagtACTGTGAAAAactcctttcataaataagTTTTGCCAGAGCATGACAGTAGTCGAAAAGATGAGAtgaacattatatatttaatcttagcttaataatataatacaacataATTCATTACCACAAAGGCCCATTTGCCTTGATATAAAATGACCTGACTGAATGATAACCTctacacacccaaacacacacacacacacacacacctggctaaACTGGAATTAAAAACAGGCGGCTATTTAAACTTGAGAGGAAATAAATTCAGCTGAAACTGGGTCATGAAAACAGaaggaaaacaaaatgcaagCACTTCAGTGTTGTATGAAACATGCTGAAAACTTAACGCACGTTGTTTTAAAACTTATTCTCATTATGATGtattatattgatttatttttttttttttaggataaaTGTATTAGGACTCTGTTAAGTGTGCCATTCCAATGGCGTCATCAGCTGTATGCGTTTGCACCATGTCAAAATTACAGTGGTTAAGAAAACAATGCAACACAAAAATGTATACATTaacaatgttgttgttgttattttttaataatgccaGAATATTACCTCATGACACTgtacttttgtgtatttttccaaGGTATTAAGGAACAAAAActgcaaacatttacaaacatggACAACAACAAGTGAGTAGCCAactacagaataataataataataataataataataataataataatgatattttaataataataataataataataataataataataataataataatgacatttacTGATATGTATTAACCACAGaagcagctgcattttttttcagtaatgtttGATTATAACGTGATTTCACAATTAGAAAATTCTCAGCTTATAAATCTGACATGATGACATGAAGGCACTGGTTACATAATGATATGCTCATAATGACTTAATCAGCTCTTAGGTGGAATTCCTTCatgttttttaatggaaaagttTCTCAAATATTGAATATAATGGTATCAAGTTTAAATACAAATCCACAGTGCACCTCTCCTTGAAATTATCTACACAAAGTGTGAACATTAAGTGGTTTCTTCTATGCTCAACACAAATAATGAGGCAGCgattaaagaaatataaagacATATTGGCTAATCTCTAACTGAAGCAGAACTCTGTAAACTGTCCATGTTCTGATATACTCACTGTAAAAAGCAAGTTAAtgcacaaactagcattatagaaAACAGGCTAAtgcacaaactagcattatagaaAACAGGCTAAtgcacaaactagcattatattaAACACGATAAagcaaactagcattatagaaCACAGGATAATGCACAAGCTAGCattattacagtaaacaggctaatgCACAAACttgcattatagtaaacaggctaaaacacaaattagcattataataaacaggataaaacacaaactagcattatagtaaacaggatAATGCACAACCTAGCATTATAGAAAAGAGGTTAAtgcacaaactagcattatagtaaacacgataaaacaaactagcattatagtaaacagtataaaacacaaattagcattatagtaaacaggctagtgcacaaactagcattatagtaaacaggataaaacacaaactagcattataagaAGGCTAAAATTTAAATCTGTATTATAGTAAACAGTTTATcttaaactagcattatagtaaattGACTAACCCTCAACCTAGAATAGCTAATCCCAACCATTATACCACACAAGCTCTGTATGTTTATTAGCCTTTTCAAAGCTGTTTTAACTTTTTGAATTCATTAACTGGCAAATGTATTTGTGACTACAGTCACagtgttaaaataaacacagctcaTTTGTAGTCTGTTTTATAAACTAGAATGAAATTAGATCAGTATTCTTGATAGCTGGCTACACGCAAGTTGCTAGTTGCTGATGAAACCGAATTCTGCAGTTCTAGTGCTTTTCATCAGTATTTATTCTCTATCTTAaacttttactgttagactgaGTCAGTGATTATGCTAAAATATGTATATGCTACACTGCATAagctaaatatatatttgtatttttatacagcagtagatttttattttttggatttaaaaaaataatctttctACATTAATGtgcattataaacatttctgaatttccgttaaataaatagatggaGTACTTTATTTAGTTATCATGATCTATGCAAATGTATTACCCCAAATGTTTCATTTGTGCTGTCCTTTATGcttttacttattattaatgtgaaaaaaaaactatgcgaatatacatataataaatatagactCTGCTATCCAGTTTACTAAATGTGGCTTTTTTGTTCATAAAAATgtagtttattaaagaatttattattataaaattaatgaaataggACTGATCCAAGTAAACTGGATAGCACAGTCAATATTTATTGTagtatatgaatatttttgtttattgatttttgtacattattgtataattttattatattattattaaatttatatgaACGGGAAAAAAGCTAATTTGGTTAATTATCCTGAGtatgttttcacattttattttacatattataaatgtaaaacaataaataagtgGTTACATTA

Function

symbol description
hs3st1 Predicted to enable cholesterol sulfotransferase activity; heparan sulfate 2-O-sulfotransferase activity; and heparan sulfate 6-O-sulfotransferase activity. Is expressed in gut; head; liver; pectoral fin; and somite. Orthologous to human HS3ST1 (heparan sulfate-glucosamine 3-sulfotransferase 1).

NR:

description
heparan sulfate glucosamine 3-O-sulfotransferase 1

GO: NA

KEGG:

id description
K01024 HS3ST1; [heparan sulfate]-glucosamine 3-sulfotransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU253634 False 1322 lncRNA 0.30 2 20205794 20207145
XM_026917223.2 True 4454 mRNA 0.35 2 20205339 20213629

Neighbor

gene id symbol gene type direction distance location
LOC113527919 clnk coding downstream 9826 20177265 ~ 20195513 (-)
wdr1 wdr1,LOC107717326,LOC106565198 coding downstream 46952 20142877 ~ 20158387 (-)
tmem128 tmem128 coding downstream 230696 19968040 ~ 19974643 (-)
otop1 otop1 coding downstream 244171 19953573 ~ 19961168 (-)
LOC113528305 evc coding downstream 271619 19920704 ~ 19933720 (-)
rab28 rab28,LOC102780097,LOC106600633,LOC107712918 coding upstream 128844 20342473 ~ 20374576 (-)
nkx3-2 nkx3-2 coding upstream 170128 20383757 ~ 20386625 (-)
LOC117598840 bod1l1 coding upstream 181055 20394684 ~ 20400475 (-)
bod1l1 bod1l1,LOC107705061 coding upstream 186851 20400480 ~ 20412128 (-)
trnal-aag_9 NA coding upstream 199220 20412849 ~ 20412930 (-)
G214159 NA non-coding downstream 149195 20020552 ~ 20056144 (-)
G213879 NA non-coding downstream 541577 19663337 ~ 19663762 (-)
G213716 tnrc6a non-coding downstream 782924 19417184 ~ 19422415 (-)
G213549 NA non-coding downstream 1132354 19023758 ~ 19072985 (-)
G213407 NA non-coding downstream 1356192 18792435 ~ 18849147 (-)
G214325 NA non-coding upstream 222423 20436052 ~ 20438834 (-)
G214331 NA non-coding upstream 231894 20445523 ~ 20445748 (-)
G214493 NA non-coding upstream 565136 20778765 ~ 20781702 (-)
G214526 NA non-coding upstream 627802 20841431 ~ 20841634 (-)
G214626 NA non-coding upstream 689469 20903098 ~ 20903837 (-)
slc2a9l2 slc2a9 other downstream 67126 20039787 ~ 20138213 (-)
lyar lyar other downstream 221190 19940354 ~ 19984149 (-)
rbbp6 rbbp6 other downstream 756780 19429217 ~ 19448559 (-)
si:dkey-204f11.64 LOC108274053 other downstream 1377605 18823471 ~ 18827734 (-)
LOC117598999 NA other downstream 1827976 18375684 ~ 18377363 (-)
spry1 spry1 other upstream 686428 20900057 ~ 20905271 (-)
fgf2 fgf2,LOC107717315 other upstream 800810 21014439 ~ 21028081 (-)
slc16a2 LOC108279893,LOC107596364 other upstream 1023173 21236802 ~ 21272507 (-)
LOC113528016 thegl other upstream 1138652 21352281 ~ 21359190 (-)
G215187 NA other upstream 1462642 21676271 ~ 22269092 (-)

Expression


Co-expression Network