LOC117598998


Basic Information

Item Value
gene id LOC117598998
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20845141 ~ 20852594 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254014
cacacacacacacacttctgagcATTTAAAGCTGGGACAAAGAGACGTTTCGTGCTTTCTGAAGCCTCCCCAaagggtgtgtgtttttcaaCGCGAACAATAGCCGAGGAGGATTAAATGTGAGGATTTCCTGCAGTTTATTTATCCTCTTCTGTGACTGTAAGTCAACGCCGAGCTGCTGTCACGCTAACGCACGCTAAA
>XR_004579420.1
cacacacacacacacacacacttctgagcATTTAAAGCTGGGACAAAGAGACGTTTCGTGCTTTCTGAAGCCTCCCCAaagggtgtgtgtttttcaaCGCGAACAATAGCCGAGGAGGATTAAATGTGAGGATTTCCTGCAGTTTATTTATCCTCTTCTGTGACTgaacaAGGAGTCAATCTATGAAGAATCGATTAACCAGTGTGAGGGTGTGGGTGTTGGGAGTCTGTTATTTATCCAGCATCAAATTTCCAGCATGGCTAATCCACAGAACATCCATGAACtagagctacacaacactggAAGAGATTCTTACCCCAGCTGTGGAAGCATCTCGAGATGTATCGCAGGTTGATGGACAGAGTTTCCATGGATAGCTTGTGGCCTCACAGGGGCCCTGTTTGACGTGATTGTCCACATCATCGGCCGAAAAATTGCCCGGAAGGACTCTACACATGAAGAATTCATCAGCAAGGCTGAGGGCATGTCTTTGTCTTTGGTAAAATTTATTCCTCCCATTAAACCATTACAAAGTGAGAGGGTCATGACATGTAAAGATTCTTGAACAGTAGAATTCAGATACTAAGAAACAGAAGCTCTTAGGGAAAAGGTTGCATATAGCATCTTAAAGTTTTCTATATTTTGACCCTCTTGGTGAACCCTATGTAGAACCTAAAAAGGTCTAAAGAGTACAAAGtctgtttccctttcagaaaaggttccctTTATAAAGCAAGAACTGTTGACCATTCAAATACCT

Function

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU254014 False 201 lncRNA 0.47 1 20845147 20845347
XR_004579420.1 True 760 lncRNA 0.42 3 20845141 20852594

Neighbor

gene id symbol gene type direction distance location
ankrd50 ankrd50 coding upstream 65909 20746708 ~ 20779232 (+)
LOC113528524 LOC108258618 coding upstream 400195 20439441 ~ 20444946 (+)
leprotl1 leprotl1,LOC103152176 coding upstream 406273 20430641 ~ 20438868 (+)
drd5a drd5,LOC107701828 coding upstream 842461 20000958 ~ 20002680 (+)
zbtb49 zbtb49 coding upstream 848208 19963720 ~ 19996933 (+)
dele1 kiaa0141 coding downstream 182666 21035260 ~ 21044307 (+)
LOC113528291 LOC108261075,LOC108434533 coding downstream 194667 21047261 ~ 21082014 (+)
tlr1 LOC108258270 coding downstream 328819 21181413 ~ 21184850 (+)
f8 LOC108279904 coding downstream 353865 21206459 ~ 21226848 (+)
LOC113527948 NA coding downstream 435886 21288480 ~ 21293794 (+)
G214369 NA non-coding upstream 373377 20471529 ~ 20471764 (+)
LOC113528473 NA non-coding upstream 451921 20264198 ~ 20393220 (+)
G214144 NA non-coding upstream 630714 20213406 ~ 20214427 (+)
G214098 wdr1 non-coding upstream 663263 20071695 ~ 20181878 (+)
G214012 NA non-coding upstream 874985 19968008 ~ 19970156 (+)
G214548 NA non-coding downstream 56234 20908828 ~ 20926678 (+)
G214694 NA non-coding downstream 292226 21144820 ~ 21158088 (+)
G214723 NA non-coding downstream 310306 21162900 ~ 21163304 (+)
G214731 NA non-coding downstream 332672 21185266 ~ 21186303 (+)
G214753 NA non-coding downstream 345948 21198542 ~ 21244785 (+)
LOC113528520 znf518b other upstream 671789 20022509 ~ 20173352 (+)
G214015 lyar other upstream 863761 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 891855 19933824 ~ 19953286 (+)
LOC113528458 LOC108275785 other upstream 933409 19873076 ~ 19911732 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other upstream 1390107 19373236 ~ 19455034 (+)
nudt6 nudt6 other downstream 159180 21011774 ~ 21024087 (+)
hopx hopx other downstream 487822 21340416 ~ 21349086 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 629428 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 661979 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 793486 21646080 ~ 21649152 (+)

Expression


Co-expression Network