Gene
RNA
| Item | Value |
|---|---|
| gene id | G214548 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 20908828 ~ 20926678 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU254040 | True | 431 | lncRNA | 0.41 | 2 | 20908828 | 20926678 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ankrd50 | ankrd50 | coding | upstream | 129596 | 20746708 ~ 20779232 (+) |
| LOC113528524 | LOC108258618 | coding | upstream | 463882 | 20439441 ~ 20444946 (+) |
| leprotl1 | leprotl1,LOC103152176 | coding | upstream | 469960 | 20430641 ~ 20438868 (+) |
| drd5a | drd5,LOC107701828 | coding | upstream | 906148 | 20000958 ~ 20002680 (+) |
| zbtb49 | zbtb49 | coding | upstream | 911895 | 19963720 ~ 19996933 (+) |
| dele1 | kiaa0141 | coding | downstream | 108582 | 21035260 ~ 21044307 (+) |
| LOC113528291 | LOC108261075,LOC108434533 | coding | downstream | 120583 | 21047261 ~ 21082014 (+) |
| tlr1 | LOC108258270 | coding | downstream | 254735 | 21181413 ~ 21184850 (+) |
| f8 | LOC108279904 | coding | downstream | 279781 | 21206459 ~ 21226848 (+) |
| LOC113527948 | NA | coding | downstream | 361802 | 21288480 ~ 21293794 (+) |
| LOC117598998 | NA | non-coding | upstream | 56234 | 20845141 ~ 20852594 (+) |
| G214369 | NA | non-coding | upstream | 437064 | 20471529 ~ 20471764 (+) |
| LOC113528473 | NA | non-coding | upstream | 515608 | 20264198 ~ 20393220 (+) |
| G214144 | NA | non-coding | upstream | 694401 | 20213406 ~ 20214427 (+) |
| G214098 | wdr1 | non-coding | upstream | 726950 | 20071695 ~ 20181878 (+) |
| G214694 | NA | non-coding | downstream | 218142 | 21144820 ~ 21158088 (+) |
| G214723 | NA | non-coding | downstream | 236222 | 21162900 ~ 21163304 (+) |
| G214731 | NA | non-coding | downstream | 258588 | 21185266 ~ 21186303 (+) |
| G214753 | NA | non-coding | downstream | 271864 | 21198542 ~ 21244785 (+) |
| LOC117598756 | NA | non-coding | downstream | 430172 | 21356850 ~ 21359059 (+) |
| LOC113528520 | znf518b | other | upstream | 735476 | 20022509 ~ 20173352 (+) |
| G214015 | lyar | other | upstream | 927448 | 19978314 ~ 19981380 (+) |
| LOC113528304 | evc2 | other | upstream | 955542 | 19933824 ~ 19953286 (+) |
| LOC113528458 | LOC108275785 | other | upstream | 997096 | 19873076 ~ 19911732 (+) |
| LOC113528521 | tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 | other | upstream | 1453794 | 19373236 ~ 19455034 (+) |
| nudt6 | nudt6 | other | downstream | 85096 | 21011774 ~ 21024087 (+) |
| hopx | hopx | other | downstream | 413738 | 21340416 ~ 21349086 (+) |
| LOC113540568 | LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 | other | downstream | 555344 | 21482022 ~ 21513040 (+) |
| LOC113540569 | LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 | other | downstream | 587895 | 21514573 ~ 21565376 (+) |
| G215015 | LOC108275153 | other | downstream | 719402 | 21646080 ~ 21649152 (+) |
