G214626


Basic Information

Item Value
gene id G214626
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20903098 ~ 20903837 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254119
AGTAACACGGCcactaaaaacaaaagtttataGATCATCTATTAGACTCGGCTTTATTCCATCACCCCCTTTCCTGACCCACTTAATAGGAAAATAGGAAGGAAAAGGTACAGGGAAATTTGAAGAATCTGGATTATTTGAGTGTTTATTGATTTCAGTTTGCATTACACACAAcaaacgattaaaaaaaaaaaacacttctcttTTGACTTTTTCCCCTCATATCCTAAAGCTCGGTTTCTGTCGGTGCGTCGACGTCCCAGGCCGTAAACTTTTCTCCGCACTGGTGCTGATCTGCATGTCAATGTCGGCCAGCCATACACATGCAGATCGGGGACGGGGAGAGTTATTGAGCTCCGTCCAACATCTCGTTAATAGTCAACCCAGTCCGACGGCCCCAAAGAGCCCAAGTGTGTCGGATCGGATGTTTCAGAGCGGTTTAAAGCAAactttttaaaagcagcagCTTTTGCTAGAGGAAGTGaatttgtgaatgtgtgagggTTTTAaggacatctctctctctctctcactatctctctcttaACCAGCTGCTTTATGAGACTGGAAAACCAATTCACACGTTTGTGTATTTGAATACAGCTTGAATACAGCCctcgtctgtctctctcaccatccctcgcttttttttttatagcccTGGTTGTAAAAGGTTACTTCCTCTCGGCTCAGGCCAATAAAAAGCTGGATGTAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254119 True 716 lncRNA 0.43 2 20903098 20903837

Neighbor

gene id symbol gene type direction distance location
LOC113528637 fat4,LOC107717300,LOC107694441 coding downstream 205938 20607624 ~ 20697160 (-)
LOC113528321 fbxl12 coding downstream 472583 20426759 ~ 20430515 (-)
tmem107 tmem107,LOC108274527 coding downstream 478426 20419758 ~ 20424672 (-)
aurkb aurkb,plk4,LOC108431899,LOC107704466,LOC107712916,LOC107705065,LOC105908766 coding downstream 484717 20414100 ~ 20418381 (-)
trnal-aag_9 NA coding downstream 490168 20412849 ~ 20412930 (-)
spata5 spata5 coding upstream 687 20904524 ~ 21003477 (-)
LOC113528290 LOC108273900 coding upstream 178182 21082019 ~ 21143863 (-)
LOC113528020 LOC108274616,LOC107676766,LOC108242416,LOC103365636,LOC107660492,LOC107088227 coding upstream 243229 21147066 ~ 21155800 (-)
ube2ka ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169 coding upstream 253643 21157480 ~ 21163061 (-)
klb klb coding upstream 262014 21165851 ~ 21174532 (-)
G214526 NA non-coding downstream 61464 20841431 ~ 20841634 (-)
G214493 NA non-coding downstream 121396 20778765 ~ 20781702 (-)
G214331 NA non-coding downstream 457350 20445523 ~ 20445748 (-)
G214325 NA non-coding downstream 464264 20436052 ~ 20438834 (-)
G214159 NA non-coding downstream 846954 20020552 ~ 20056144 (-)
G214917 NA non-coding upstream 423823 21327660 ~ 21329675 (-)
G214933 NA non-coding upstream 455860 21359697 ~ 21359899 (-)
G214941 NA non-coding upstream 503033 21406870 ~ 21458183 (-)
G214947 NA non-coding upstream 515931 21419768 ~ 21468331 (-)
G214949 LOC108280967,LOC108280981,LOC108277545 non-coding upstream 531757 21435594 ~ 21505792 (-)
hs3st1 hs3st1 other downstream 689469 20205339 ~ 20213629 (-)
slc2a9l2 slc2a9 other downstream 764885 20039787 ~ 20138213 (-)
lyar lyar other downstream 918949 19940354 ~ 19984149 (-)
rbbp6 rbbp6 other downstream 1454539 19429217 ~ 19448559 (-)
si:dkey-204f11.64 LOC108274053 other downstream 2075364 18823471 ~ 18827734 (-)
fgf2 fgf2,LOC107717315 other upstream 110602 21014439 ~ 21028081 (-)
slc16a2 LOC108279893,LOC107596364 other upstream 332965 21236802 ~ 21272507 (-)
LOC113528016 thegl other upstream 448444 21352281 ~ 21359190 (-)
G215187 NA other upstream 772434 21676271 ~ 22269092 (-)
G215188 NA other upstream 781867 21685704 ~ 21970414 (-)

Expression


Co-expression Network