G214694


Basic Information

Item Value
gene id G214694
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21144820 ~ 21158088 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254189
TGCTGTATTAGCCACGAAactcttctgtttatttcacttttccttaaaacaataataaataaaagcattgcCACATTGCTTTAATTTATACAGACTTTAATAGCTTTATTTACAGATGAAATCGTTTCTTTCTTCTGCTGTTTCTGCAGTCAATGCTTTGTTCAGTGAGTGTGATTCCGTTTACCTCCTttcttactctttttttttttttttttttttttaatttttttttatttgtatttatttgatttactgGCATCGTAGAAATGGGATTCCACATAAAAGAGCTTGAATGATTGTGCAAAATGGAGGAGGGAGCAGTATGGGAATGTCCAGCACTGTGGTAAGAATCACATGATCAGTATGAGGAGGATACAGAGGATGACAATGATAAAGGGGAGAAATAGGGAATACTGTTGAGGGAAAGGTACACTTAACTCAAAAAGgtgaaaaagaacaacaaaaagtgTGAGAAGATGGAAAGATGAAGGAGTGAGAGTTTAGGAAAAGACTGTAATttcagatggagagagagaaagatggaaggGACACGTAAATGCAGTGTGTTGGGTGGGGAATCAAGGTGCAATATTTCCATACAGGAAGTGAATCCGACTTGGACATGGGCGGAGTCAAGGGTGTGGGTGGTGAACAGGGTGCTGTAGGTTCAGTTGCTAAGCAACAACTCCGTTGCCGTCTCCACATCCCAGGATTTTGACGACAATGCCACT
>TU254190
ttttttttttttttttttttatttttttttttttttttaatttttttttatttgtatttatttgatttactgGCATCGTAGAAATGGGATTCCACATAAAAGAGCTTGAATGATTGTGCAAAATGGAGGAGGGAGCAGTATGGGAATGTCCAGCACTGTGGTAAGAATCACATGATCAGTATGAGGAGGATACAGAGGATGACAATGATAAAGGGGAGAAATAGGGAATACTGTTGAGGGAAAGGTACACTTAACTCAAAAAGgtgaaaaagaacaacaaaaagtgTGAGAAGATGGAAAGATGAAGGAGTGAGAGTTTAGGAAAAGACTGTAATttcagatggagagagagaaagatggaaggGACACGTAAATGCAGTGTGTTGGGTGGGGAATCAAGGTGCAATATTTCCATACAGGAAGTGAATCCGACTTGGACATGGGCGGAGTCAAGGGTGTGGGTGGTGAACAGGGTGCTGTAGGTTCAGTTGCTAAGCAACAACTCCGTTGCCGTCTCCACATCCCAGGATTTTGACGACAATGCCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254189 True 731 lncRNA 0.38 2 21157282 21158088
TU254190 False 548 lncRNA 0.39 3 21144820 21158088

Neighbor

gene id symbol gene type direction distance location
LOC113528291 LOC108261075,LOC108434533 coding upstream 62806 21047261 ~ 21082014 (+)
dele1 kiaa0141 coding upstream 100513 21035260 ~ 21044307 (+)
ankrd50 ankrd50 coding upstream 365588 20746708 ~ 20779232 (+)
LOC113528524 LOC108258618 coding upstream 699874 20439441 ~ 20444946 (+)
leprotl1 leprotl1,LOC103152176 coding upstream 705952 20430641 ~ 20438868 (+)
tlr1 LOC108258270 coding downstream 23325 21181413 ~ 21184850 (+)
f8 LOC108279904 coding downstream 48371 21206459 ~ 21226848 (+)
LOC113527948 NA coding downstream 130392 21288480 ~ 21293794 (+)
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding downstream 143555 21301643 ~ 21328754 (+)
LOC113527892 NA coding downstream 223692 21381780 ~ 21387087 (+)
G214548 NA non-coding upstream 218142 20908828 ~ 20926678 (+)
LOC117598998 NA non-coding upstream 292226 20845141 ~ 20852594 (+)
G214369 NA non-coding upstream 673056 20471529 ~ 20471764 (+)
LOC113528473 NA non-coding upstream 751600 20264198 ~ 20393220 (+)
G214144 NA non-coding upstream 930393 20213406 ~ 20214427 (+)
G214723 NA non-coding downstream 4812 21162900 ~ 21163304 (+)
G214731 NA non-coding downstream 27178 21185266 ~ 21186303 (+)
G214753 NA non-coding downstream 40454 21198542 ~ 21244785 (+)
LOC117598756 NA non-coding downstream 198762 21356850 ~ 21359059 (+)
G214798 NA non-coding downstream 209936 21368024 ~ 21368228 (+)
nudt6 nudt6 other upstream 120733 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 971468 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1163440 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1191534 19933824 ~ 19953286 (+)
LOC113528458 LOC108275785 other upstream 1233088 19873076 ~ 19911732 (+)
hopx hopx other downstream 182328 21340416 ~ 21349086 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 323934 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 356485 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 487992 21646080 ~ 21649152 (+)
G215022 NA other downstream 504996 21663084 ~ 22000809 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G15173 LOC102077075 unknown NC_053113.1 CM020910.1 7398101 ~ 7399141 (+)