G214731


Basic Information

Item Value
gene id G214731
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21185266 ~ 21186303 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254231
AGTCTGATTTCAATTACTGCCAAATCAAGTAACATTTCCATGTTTATTAGATAACCAAACAACAGACATTACCAAGCAATGCAGTTTCCTGTCAACATAACTACTTGGACATAGACACCGTAAGAAGACTGAGAGGTTCTTCATAGGACAGGATGCAACTAGTGCAACCAATTAGTCGAACGTTTGCAATATGCAATTTCACAAGCTTTAACAGGGAAATATACCAGAATCCATTACCCCGTTAAAAGTAAGACACTCCTGTTTGAGGTCTCTGCACTTATCCAAAATAGGCAACTCTAAACCTAGACAATTCACAAAGGCTACAAAAGTCAATAGTAAACAGTATCAAGTTGAAAAATAAGTTTTTCTCACAAATGTTGCAAATTCAGCAAGAATTAGGGCATAGGGCagaattcaaatgaaaaattcCTCCCTGAAacaaattatatatgtatataggaTACATAGAATAATGGTTAGATTTTGTTGTGAGCTCCTAAAAACACCAGGTTTGTCATATTAATGACAAATCCAATGTACATACAGTGGGGacagttccagaatgcaatgcagctacatGGCCCAGTTGAGCGGAGTTACGGCAGAGACTCTGCTCAGTTAGTTAGCGATCTAGGAGATGACGAGTGCAACAGCATTGAaagtggtattagcatgaaagctttgCGTTGCTGAAGATTGtgataattataaagattaatatggaAGTTATATagggtggatttttccattAAGTGTCCAAGGTCAGGGTAAGGACTGGATGAGGATGATTTTCTCATTAATGCAGAATCGATGTAGCACGCCGAGTAGATTTTCTCCGCAGCGAGACACCTGGCGCTCCATCGCTAGCCGGAAATCTTCTTTCACCCCCTTGGTAATGCCACGAGTCACAGTGTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254231 True 917 lncRNA 0.39 2 21185266 21186303

Neighbor

gene id symbol gene type direction distance location
tlr1 LOC108258270 coding upstream 416 21181413 ~ 21184850 (+)
LOC113528291 LOC108261075,LOC108434533 coding upstream 103252 21047261 ~ 21082014 (+)
dele1 kiaa0141 coding upstream 140959 21035260 ~ 21044307 (+)
ankrd50 ankrd50 coding upstream 406034 20746708 ~ 20779232 (+)
LOC113528524 LOC108258618 coding upstream 740320 20439441 ~ 20444946 (+)
f8 LOC108279904 coding downstream 20156 21206459 ~ 21226848 (+)
LOC113527948 NA coding downstream 102177 21288480 ~ 21293794 (+)
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding downstream 115340 21301643 ~ 21328754 (+)
LOC113527892 NA coding downstream 195477 21381780 ~ 21387087 (+)
LOC113527856 NA coding downstream 204600 21390903 ~ 21402724 (+)
G214723 NA non-coding upstream 21962 21162900 ~ 21163304 (+)
G214694 NA non-coding upstream 27178 21144820 ~ 21158088 (+)
G214548 NA non-coding upstream 258588 20908828 ~ 20926678 (+)
LOC117598998 NA non-coding upstream 332672 20845141 ~ 20852594 (+)
G214369 NA non-coding upstream 713502 20471529 ~ 20471764 (+)
G214753 NA non-coding downstream 12239 21198542 ~ 21244785 (+)
LOC117598756 NA non-coding downstream 170547 21356850 ~ 21359059 (+)
G214798 NA non-coding downstream 181721 21368024 ~ 21368228 (+)
G214800 NA non-coding downstream 220070 21406373 ~ 21464629 (+)
LOC117598826 LOC108277545,LOC108280981,LOC108280985,LOC108277574,LOC108280967 non-coding downstream 228159 21414462 ~ 21416513 (+)
nudt6 nudt6 other upstream 161179 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1011914 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1203886 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1231980 19933824 ~ 19953286 (+)
LOC113528458 LOC108275785 other upstream 1273534 19873076 ~ 19911732 (+)
hopx hopx other downstream 154113 21340416 ~ 21349086 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 295719 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 328270 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 459777 21646080 ~ 21649152 (+)
G215022 NA other downstream 476781 21663084 ~ 22000809 (+)

Expression


Co-expression Network