hopx (hopx)


Basic Information

Item Value
gene id hopx
gene name hopx
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21340416 ~ 21349086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254299
CGCGCCGTGTTGTGTTTATCCTGCAGCATTGTCTCCTCGCGCTGAAACTCGGGACTGACTTGgggcttattattatttatttattatttatttatttttctgctctTTCTGGTTTCTGAGCAGCGCCATGGCCTCTAACGGGAGCGGGACGGAGGCGCTGGGCACGCGCCTGGCGGAGGATCAGCTGCGCGTGCTGGAGGAGAATTTCTCTCGCGGGGGCCGGAACCCGGACGGAGCAACGCTCGCGCTCATCGCTGCTGAATGTGGACTCAGTGAGGAGGAGACGCTGAAATGGTTCAGGATGCGTAACGCTCAGTGGAGACAAGCAGAGGGACTGCCTGCTCAACCGGGATCAGTCAAAGACTGAAGACAAGCGAGAAGCTCTCTATCTCTATACGCACACCTCCTGCCGCTAGTCCTCtctatccatcatccatcccttttctttccatccatccttcttattctattcatccatccagtaTGGGACAGTTCTCTTGCTTTCTCAGCTTTGTGCCCC
>TU254300
ACACAAGATGAGCATCtgaggtctggagagcagacaGATACACGGttatatctttttaaaatgtgttaaatcatCAGTGTTAGAGCACAACTCTTTACTAGTGTTCAGCTACTCTGTAGTCCACGCGCGTCTGCATAGTTGCAAGTGCACGCGCATGTgtcttttttagtgtttttctcgCGCCATGGCCTCTAACGGGAGCGGGACGGAGGCGCTGGGCACGCGCCTGGCGGAGGATCAGCTGCGCGTGCTGGAGGAGAATTTCTCTCGCGGGGGCCGGAACCCGGACGGAGCAACGCTCGCGCTCATCGCTGCTGAATGTGGACTCAGTGAGGAGGAGACGCTGAAATGGTTCAGGATGCGTAACGCTCAGTGGAGACAAGCAGAGGGACTGCCTGCTCAACCGGGATCAGTCAAAGACTGAAGACAAGCGAGAAGCTCTCTATCTCTATACGCACACCTCCTGCCGCTAGTCCTCtctatccatcatccatcccttttctttccatccatccttcttattctattcatccatccagtaTGGGACAGTTCTCTTGCTTTCTCAGCTTTGTGCCCC
>TU254301
TCCCTTGCCTCAAACTCAATTTGTGCTTCTTGTCTAATCAGGGTggaaaagcaaatcacagCGCCATGGCCTCTAACGGGAGCGGGACGGAGGCGCTGGGCACGCGCCTGGCGGAGGATCAGCTGCGCGTGCTGGAGGAGAATTTCTCTCGCGGGGGCCGGAACCCGGACGGAGCAACGCTCGCGCTCATCGCTGCTGAATGTGGACTCAGTGAGGAGGAGACGCTGAAATGGTTCAGGATGCGTAACGCTCAGTGGAGACAAGCAGAGGGACTGCCTGCTCAACCGGGATCAGTCAAAGACTGAAGACAAGCGAGAAGCTCTCTATCTCTATACGCACACCTCCTGCCGCTAGTCCTCtctatccatcatccatcccttttctttccatccatccttcttattctattcatccatccagtaTGGGACAGTTCTCTTGCTTTCTCAGCTTTGTGCCCCCTTGGctatatgtgaaataaatgtatattgcACACATGAATGTCATGtttacataaagaaataaactgtATATATGGTTATGAGTGAATGCAGTGCTTCCTGCCAATGTATCTTTAAAGGTAATCAAGTGATACGAtgagtgaggaataaaacactttgggggcatgcgttacaggaaaataatctcgATTGACTGTTATCACCCcacagttaattattttaactgCTAACACCatttcccaaagtgttttattgcg
>TU254302
ACACAAGATGAGCATCtgaggtctggagagcagacaGATACACGCGCCATGGCCTCTAACGGGAGCGGGACGGAGGCGCTGGGCACGCGCCTGGCGGAGGATCAGCTGCGCGTGCTGGAGGAGAATTTCTCTCGCGGGGGCCGGAACCCGGACGGAGCAACGCTCGCGCTCATCGCTGCTGAATGTGGACTCAGTGAGGAGGAGACGCTGAAATGGTTCAGGATGCGTAACGCTCAGTGGAGACAAGCAGAGGGACTGCCTGCTCAACCGGGATCAGTCAAAGACTGAAGACAAGCGAGAAGCTCTCTATCTCTATACGCACACCTCCTGCCGCTAGTCCTCtctatccatcatccatcccttttctttccatccatccttcttattctattcatccatccagtaTGGGACAGTTCTCTTGCTTTCTCAGCTTTGTGCCCC
>TU254303
ACACAAGATGAGCATCtgagCGCCATGGCCTCTAACGGGAGCGGGACGGAGGCGCTGGGCACGCGCCTGGCGGAGGATCAGCTGCGCGTGCTGGAGGAGAATTTCTCTCGCGGGGGCCGGAACCCGGACGGAGCAACGCTCGCGCTCATCGCTGCTGAATGTGGACTCAGTGAGGAGGAGACGCTGAAATGGTTCAGGATGCGTAACGCTCAGTGGAGACAAGCAGAGGGACTGCCTGCTCAACCGGGATCAGTCAAAGACTGAAGACAAGCGAGAAGCTCTCTATCTCTATACGCACACCTCCTGCCGCTAGTCCTCtctatccatcatccatcccttttctttccatccatccttcttattctattcatccatccagtaTGGGACAGTTCTCTTGCTTTCTCAGCTTTGTGCCCC
>XM_026916224.2
tctttttaaaatgtgttaaatcatCAGTGTTAGAGCACAACTCTTTACTAGTGTTCAGCTACTCTGTAGTCCACGCGCGTCTGCATAGTTGCAAGTGCACGCGCATGTgtcttttttagtgtttttctcgCGCCATGGCCTCTAACGGGAGCGGGACGGAGGCGCTGGGCACGCGCCTGGCGGAGGATCAGCTGCGCGTGCTGGAGGAGAATTTCTCTCGCGGGGGCCGGAACCCGGACGGAGCAACGCTCGCGCTCATCGCTGCTGAATGTGGACTCAGTGAGGAGGAGACGCTGAAATGGTTCAGGATGCGTAACGCTCAGTGGAGACAAGCAGAGGGACTGCCTGCTCAACCGGGATCAGTCAAAGACTGAAGACAAGCGAGAAGCTCTCTATCTCTATACGCACACCTCCTGCCGCTAGTCCTCtctatccatcatccatcccttttctttccatccatccttcttattctattcatccatccagtaTGGGACAGTTCTCTTGCTTTCTCAGCTTTGTGCCCCCTTGGctatatgtgaaataaatgtatattgcACACATGAATGTCATGtttacataaagaaataaactgtATATATGGTTATGAGTGAA
>XM_034309781.1
AACAACACAAAGATCCAAGGTTGTTGTGACGTCACTGTGTACATATTGCGTCATAAGTACACAAGATGAGCATCtgaggtctggagagcagacaGATACACGCGCCATGGCCTCTAACGGGAGCGGGACGGAGGCGCTGGGCACGCGCCTGGCGGAGGATCAGCTGCGCGTGCTGGAGGAGAATTTCTCTCGCGGGGGCCGGAACCCGGACGGAGCAACGCTCGCGCTCATCGCTGCTGAATGTGGACTCAGTGAGGAGGAGACGCTGAAATGGTTCAGGATGCGTAACGCTCAGTGGAGACAAGCAGAGGGACTGCCTGCTCAACCGGGATCAGTCAAAGACTGAAGACAAGCGAGAAGCTCTCTATCTCTATACGCACACCTCCTGCCGCTAGTCCTCtctatccatcatccatcccttttctttccatccatccttcttattctattcatccatccagtaTGGGACAGTTCTCTTGCTTTCTCAGCTTTGTGCCCCCTTGGctatatgtgaaataaatgtatattgcACACATGAATGTCATGtttacataaagaaataaactgtATATATGGTTATGAGTGAA

Function

symbol description
hopx Predicted to enable DNA binding activity. Acts upstream of or within heart development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in hatching gland; heart; sensory system; and solid lens vesicle. Orthologous to human HOPX (HOP homeobox).

NR:

description
PREDICTED: homeodomain-only protein

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254299 False 520 TUCP 0.53 2 21341566 21348829
TU254300 False 577 TUCP 0.52 3 21341247 21348829
TU254301 True 715 TUCP 0.48 3 21340416 21349086
TU254302 False 441 TUCP 0.56 3 21341247 21348829
TU254303 False 417 TUCP 0.56 3 21341247 21348829
XM_026916224.2 False 615 mRNA 0.49 3 21341297 21348917
XM_034309781.1 False 587 mRNA 0.50 3 21341189 21348917

Neighbor

gene id symbol gene type direction distance location
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding upstream 11662 21301643 ~ 21328754 (+)
LOC113527948 NA coding upstream 46622 21288480 ~ 21293794 (+)
f8 LOC108279904 coding upstream 113568 21206459 ~ 21226848 (+)
tlr1 LOC108258270 coding upstream 155566 21181413 ~ 21184850 (+)
LOC113528291 LOC108261075,LOC108434533 coding upstream 258402 21047261 ~ 21082014 (+)
LOC113527892 NA coding downstream 32694 21381780 ~ 21387087 (+)
LOC113527856 NA coding downstream 41817 21390903 ~ 21402724 (+)
LOC117598821 NA coding downstream 56254 21405340 ~ 21430458 (+)
LOC117598820 LOC108280985,LOC108277545 coding downstream 105032 21454118 ~ 21480442 (+)
LOC113540583 NA coding downstream 192904 21541990 ~ 21546092 (+)
G214753 NA non-coding upstream 95631 21198542 ~ 21244785 (+)
G214731 NA non-coding upstream 154113 21185266 ~ 21186303 (+)
G214723 NA non-coding upstream 177112 21162900 ~ 21163304 (+)
G214694 NA non-coding upstream 182328 21144820 ~ 21158088 (+)
G214548 NA non-coding upstream 413738 20908828 ~ 20926678 (+)
LOC117598756 NA non-coding downstream 7764 21356850 ~ 21359059 (+)
G214798 NA non-coding downstream 18938 21368024 ~ 21368228 (+)
G214800 NA non-coding downstream 57287 21406373 ~ 21464629 (+)
LOC117598826 LOC108277545,LOC108280981,LOC108280985,LOC108277574,LOC108280967 non-coding downstream 65376 21414462 ~ 21416513 (+)
G214802 NA non-coding downstream 77888 21426974 ~ 21448404 (+)
nudt6 nudt6 other upstream 316329 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1167064 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1359036 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1387130 19933824 ~ 19953286 (+)
LOC113528458 LOC108275785 other upstream 1428684 19873076 ~ 19911732 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 132936 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 165487 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 296994 21646080 ~ 21649152 (+)
G215022 NA other downstream 313998 21663084 ~ 22000809 (+)
G215010 LOC108275153 other downstream 315472 21664558 ~ 21711769 (+)

Expression


Co-expression Network