G214798


Basic Information

Item Value
gene id G214798
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21368024 ~ 21368228 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254313
gggagaaagaaaaaggtaaAGAATATTAAGACATAATGCATAAAATTCAGCAATCACTTGGGAGAAAAATAATTGAAACATACCACACTCTAGAGAAAATGTGTTTGGAAAGGTGTGAgctggtgttttattcctttcataccACTGCAGTTTGCCAAGACAAACATTTCATGTTATAAACTAAATAACAGCTAAACCAGTTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254313 True 205 lncRNA 0.33 1 21368024 21368228

Neighbor

gene id symbol gene type direction distance location
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding upstream 39270 21301643 ~ 21328754 (+)
LOC113527948 NA coding upstream 74230 21288480 ~ 21293794 (+)
f8 LOC108279904 coding upstream 141176 21206459 ~ 21226848 (+)
tlr1 LOC108258270 coding upstream 183174 21181413 ~ 21184850 (+)
LOC113528291 LOC108261075,LOC108434533 coding upstream 286010 21047261 ~ 21082014 (+)
LOC113527892 NA coding downstream 13552 21381780 ~ 21387087 (+)
LOC113527856 NA coding downstream 22675 21390903 ~ 21402724 (+)
LOC117598821 NA coding downstream 37112 21405340 ~ 21430458 (+)
LOC117598820 LOC108280985,LOC108277545 coding downstream 85890 21454118 ~ 21480442 (+)
LOC113540583 NA coding downstream 173762 21541990 ~ 21546092 (+)
LOC117598756 NA non-coding upstream 8965 21356850 ~ 21359059 (+)
G214753 NA non-coding upstream 123239 21198542 ~ 21244785 (+)
G214731 NA non-coding upstream 181721 21185266 ~ 21186303 (+)
G214723 NA non-coding upstream 204720 21162900 ~ 21163304 (+)
G214694 NA non-coding upstream 209936 21144820 ~ 21158088 (+)
G214800 NA non-coding downstream 38145 21406373 ~ 21464629 (+)
LOC117598826 LOC108277545,LOC108280981,LOC108280985,LOC108277574,LOC108280967 non-coding downstream 46234 21414462 ~ 21416513 (+)
G214802 NA non-coding downstream 58746 21426974 ~ 21448404 (+)
G214804 NA non-coding downstream 79765 21447993 ~ 21466726 (+)
G214807 NA non-coding downstream 106405 21474633 ~ 21474963 (+)
hopx hopx other upstream 18938 21340416 ~ 21349086 (+)
nudt6 nudt6 other upstream 343937 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1194672 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1386644 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1414738 19933824 ~ 19953286 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 113794 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 146345 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 277852 21646080 ~ 21649152 (+)
G215022 NA other downstream 294856 21663084 ~ 22000809 (+)
G215010 LOC108275153 other downstream 296330 21664558 ~ 21711769 (+)

Expression


Co-expression Network