G214807


Basic Information

Item Value
gene id G214807
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21474633 ~ 21474963 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254324
ccaaaccatcttaatctggcctccctaactttgtcccccaaacgtccaacatgagctgttcccctgatgtactcgttcctaatcctgtccaaccttgtcactcccaaagagaacctcaacatcttcagctctgctacctctagctctgactcctgtctcttcctcagtgccactgtctctaaaccattctcgctgatatttttctatcacacagaactcccgacacctttctccacccattccaacctgcctgcactcgcttctttacctctttcccacactctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254324 True 285 lncRNA 0.49 2 21474633 21474963

Neighbor

gene id symbol gene type direction distance location
LOC117598821 NA coding upstream 44175 21405340 ~ 21430458 (+)
LOC113527856 NA coding upstream 71909 21390903 ~ 21402724 (+)
LOC113527892 NA coding upstream 87546 21381780 ~ 21387087 (+)
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding upstream 145879 21301643 ~ 21328754 (+)
LOC113527948 NA coding upstream 180839 21288480 ~ 21293794 (+)
LOC113540583 NA coding downstream 67027 21541990 ~ 21546092 (+)
rest rest coding downstream 145668 21620631 ~ 21631906 (+)
LOC117598747 NA coding downstream 170889 21645852 ~ 21646623 (+)
LOC117598748 NA coding downstream 172273 21647236 ~ 21647803 (+)
LOC117598992 NA coding downstream 183539 21658502 ~ 21659107 (+)
G214804 NA non-coding upstream 7907 21447993 ~ 21466726 (+)
G214800 NA non-coding upstream 10004 21406373 ~ 21464629 (+)
G214802 NA non-coding upstream 26229 21426974 ~ 21448404 (+)
LOC117598826 LOC108277545,LOC108280981,LOC108280985,LOC108277574,LOC108280967 non-coding upstream 58120 21414462 ~ 21416513 (+)
G214798 NA non-coding upstream 106405 21368024 ~ 21368228 (+)
LOC117598827 LOC108280967,LOC108277545,LOC108277574 non-coding downstream 27174 21502137 ~ 21505786 (+)
G214747 LOC108280967 non-coding downstream 76586 21551549 ~ 21556401 (+)
G214825 NA non-coding downstream 142132 21617095 ~ 21617294 (+)
G214829 NA non-coding downstream 159888 21634851 ~ 21635074 (+)
G215042 NA non-coding downstream 181298 21656261 ~ 21656835 (+)
hopx hopx other upstream 125547 21340416 ~ 21349086 (+)
nudt6 nudt6 other upstream 450546 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1301281 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1493253 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1521347 19933824 ~ 19953286 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 7059 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 39610 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 171117 21646080 ~ 21649152 (+)
G215022 NA other downstream 188121 21663084 ~ 22000809 (+)
G215010 LOC108275153 other downstream 189595 21664558 ~ 21711769 (+)

Expression


Co-expression Network