LOC113540568 (LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967)


Basic Information

Item Value
gene id LOC113540568
gene name LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21482022 ~ 21513040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254327
ggtttcatggtgtttgtgtctgtgtggctcTGTGAAGTCATCATCCTTCTGTCGCTGTTAGTGGGAGCGTTTTATATCTACACCAGAATCTacaggaaacagaaaataaCTGAGAATCAGGAAGCTCTGTAAACCTAGATTAGGAACAGAAGAAGCAGTCCACGATTGCTCTCCTCCATGCCAGCAACCCGTCCACCCTGAACCAGCAGAAATGTATAACCATCAATAACAGATGGGTAACAgagaaaacaaattttattcCTCAATCCACATCTTCTTTTCAAAAACTAAACCAGCC
>XM_034309811.1
GGAGGTTGATTTTGCTATTGTATTTGCTCATCACTCACGACCAAGATCTCTAGCAAGTACAGAGAGAGGACTGTTCTCTGGATAAAATGAGAATACAGGTCATCTTTGGAATCCtgtggattttcacacaagctGCCATGGgTTTGCTGTTTCAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGCTCTGGGACAACGACTGCACCTGCCAATGCCCATGGAGGATGGGTTAGACCTAAAGATCATAGACAAGACATCTACCCCTCATTTAATTTTAAGATATAGAAAAACCCAAAGTAACCCACCAAAACCAAATCCCCCAAGATGGCAGTTTGGTAATGATAATAAAACTATGATACTAACCAGTGCAGAGAGGAATGACTCTGGAACATACACTTTAGACACCTATGATGCAAACGGGAATCTTAAAGGCAATTATACTCTCCAGCTAAACATTGAAGCTGAGGTGTCCTCAGTGAAATTGTGGTACAGCTGCTTGTCCCCTGGAGTCATGAAAGTGTACTGTTCTGCTGATGGAGACAATCTCCGCTTCAACTGGACTCCTGATTTAAACACACTCCCTCAACTGGAGAACGGGATCAGCACTCTCATACTGAATAAAGATCATCATGGAAACGTCACCTGCCGTGTAGAAAATCATGTCAGCTATAACTACAATACCACTCAACTCCACCCATGTCCTGGAATCGGGAATCTTAAAGGCAATTATACTCTCCAGCTAAACATTGAAGCTGAGGTGTCCTCAGTGAAATTGTGGTACAACTGCTTGTCCCCTGGAGTCATGAAAGTGTACTGTTCTGCTGATGGAGACAATCTCCGCTTCAACTGGACTCCTGATTTAAACACACTCCCTCAACTGGAGAAGGGGAACAGCACTCTCATACTGAATAAAGATCATCATGGAAATGTCACCTGCCATGTAGAAAATCATGTCAGCTATAACTACAATACCACTGAACTCCACCCATGTCCTGgtttcatggtgtttgtgtctgtgtggctcTGTGAAGTCATCATCCTTCTGTCGCTGTTAGTGGGAGCGTTTTATATCTACACCAGAATCTacaggaaacagaaaataaCTGAGAATCAGGAAGCTCTGTAAACCTAGATTAGGAACAGAAGAAGCAGTCCACGATTGCTCTCCTCCATGCCAGCAACCCGTCCACCCTGAACCAGCAGAAATGTATAACCATCAATAACAGATGGGTAACAgagaaaacaaattttattcCTCAATCCACATCTTCTTTTCAAAAACTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254327 False 298 lncRNA 0.42 2 21512571 21513040
XM_034309811.1 True 1302 mRNA 0.43 7 21482022 21513034

Neighbor

gene id symbol gene type direction distance location
LOC117598820 LOC108280985,LOC108277545 coding upstream 1580 21454118 ~ 21480442 (+)
LOC117598821 NA coding upstream 51564 21405340 ~ 21430458 (+)
LOC113527856 NA coding upstream 79298 21390903 ~ 21402724 (+)
LOC113527892 NA coding upstream 94935 21381780 ~ 21387087 (+)
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding upstream 153268 21301643 ~ 21328754 (+)
LOC113540583 NA coding downstream 28950 21541990 ~ 21546092 (+)
rest rest coding downstream 107591 21620631 ~ 21631906 (+)
LOC117598747 NA coding downstream 132812 21645852 ~ 21646623 (+)
LOC117598748 NA coding downstream 134196 21647236 ~ 21647803 (+)
LOC117598992 NA coding downstream 145462 21658502 ~ 21659107 (+)
G214807 NA non-coding upstream 7059 21474633 ~ 21474963 (+)
G214804 NA non-coding upstream 15296 21447993 ~ 21466726 (+)
G214800 NA non-coding upstream 17393 21406373 ~ 21464629 (+)
G214802 NA non-coding upstream 33618 21426974 ~ 21448404 (+)
LOC117598826 LOC108277545,LOC108280981,LOC108280985,LOC108277574,LOC108280967 non-coding upstream 65509 21414462 ~ 21416513 (+)
G214747 LOC108280967 non-coding downstream 38509 21551549 ~ 21556401 (+)
G214825 NA non-coding downstream 104055 21617095 ~ 21617294 (+)
G214829 NA non-coding downstream 121811 21634851 ~ 21635074 (+)
G215042 NA non-coding downstream 143221 21656261 ~ 21656835 (+)
G215055 NA non-coding downstream 204652 21717692 ~ 21718076 (+)
hopx hopx other upstream 132936 21340416 ~ 21349086 (+)
nudt6 nudt6 other upstream 457935 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1308670 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1500642 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1528736 19933824 ~ 19953286 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 1533 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 133040 21646080 ~ 21649152 (+)
G215022 NA other downstream 150044 21663084 ~ 22000809 (+)
G215010 LOC108275153 other downstream 151518 21664558 ~ 21711769 (+)
G215008 LOC108275153 other downstream 198154 21711194 ~ 21721059 (+)

Expression


Co-expression Network