LOC113540570 (LOC108277574,LOC108280967,LOC108277545)


Basic Information

Item Value
gene id LOC113540570
gene name LOC108277574,LOC108280967,LOC108277545
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21485240 ~ 21495618 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254484
GCTGCATTGTTTTTTCTTCGtctaatcattattttaaaaagacagactCACCAGGACATGGGTGGAGTTGAGTGGTATTGTAGTTATAGCTGACATGATTTTCTACACGGCAGGTGACGTTTCCATGATGATCTTTATTCAGTATGAGAGTGCTGATCCCGTTCTCCAGTTGAGGGAGTGTGTTTAAATCAGGAGTCCAGTTGAAGCGGAGATTGTCTCCATCAGCAGAACAGTACACTTTCATGACTCCAGGGGACAAGCAGCTGTACCACAATTTCACTGAGGACACCTCAGCTGCAGATTAGAGATAATCAAATTTACTATGGATACCTGAATCAAGACTATCAAACTGAAGAAACTGACTGTCTCTCCaaccacacacaggacaaagacaTCCCTTCACACCCAACGGACCTAAGATGGCTCCAGCCTGTCTAGGCTAAACGACAGGTCATTAAACATTAAGGGATGCTAACGGTCGTCAGAATgcagaaaaccccaaaaaaaggGTGTAAATTACCCCTCCGTGGAGCTGAACTCGAATTGACCACCCTTAACAGAtgccttttgtttggattagggAACTGGAGGAGATTAATCACACTCCACACCACGCTACATCCTGCTGAGGTTGAAGTGACCTTTGGTCTCAACTGAATCAGCAAAGGACTCCAGGCCTAAGACTCCTCcactttttaagaatgttcttttctttctctgtatctgccttattttatttcaatgaaGTTGCTGAGTtttgtgttaaatctgtatgGGGAACATGCcttcacacatactgtattaaaCCAGAGAGCAAGAGTTAACTTACACTTCAGCCATGGTGACTTCTCACATGGTGGGAAGTCCGGTGCTACCTCCAAATCATGTATTCAAACCAGCATTATATTACAACCCCACTATTAATGGAGTTACATAATATtaagtctgtttctttctgtaaacacGCCATTATATAGCTAATGGCCATGGCTAATGTATGTCATGTGTGGTATCTGCATGCTTGTCTTCATGTGCAGAAGCTGTTGATGATTTGCAATTCTCAGTACctcatatcatacatttattataagcattaaaggtaaataagacCACATTACAGTGGATATTGAGAAGGGGGCGACCCGGGGGGTCACTTGCAAATTAGCTGGAGGGCCAGCCAAGCCAATCTCCAATCATCTCCAAACCGGCCTGCGGTTGGCTGAAGACCTCAAGAGGCTGGCTCATCTAAACTAACATAAAACCGCATGCccaacacagaaacacacaggaaTGCAACAACACAAGAACAAAGAACAGAGCCAGAGCGGGAGCTGAACTGGAACGGCGCTGGGACCAGAACAGAGCTGGAACAGGAAGAGAACCTGCACAAGAAGATCCCAAGACTTGCATCACTGAACATTGCTTGACTCGACCCTTCGCCCAGCCGTCCAGACTCTAGCCTCCCTCTCCGGCGACGATCAATAACTTCTCTAACATCCTCCAACTCCGGTCCGACTAGAACCTGCTGACCAACACCAACTCCTTCCATTCACCACCTAGGCAAAGCAAGTATTGATACCTCccaacttcattaagctggtgcAGTAAACCTAAATCTCTTTTCACCAGTTAATGCTGATTTATCAGGTTTATGTCTAAGAACTCAACTCTCTGATTATTCTCACTGGTTCTTCTCATTCCATATCCctacatgtatgaatgtgtatgtctgtgtgtgtgtgttggttgtgtgtagtagtttaggaTATATGTGTAGTAGTTTAGTATATGTGTATAGTAGCTTAGTATAATAAA
>XR_004579355.1
GTGTCTAAAGTGTATGTTCCAGAGTCATTCCTCTCTGCACTGGTGCAGTCGTTGTCCCAGAGCTACATAACACTGATTACTCTCAGTAAATCTACAGACAACAGGATCCTGAAACAGCAAAcctgcagaagaagaaaaaatcagaagccttgccagaaaggttcacaggacaTCAGGTTGAGACTAGAGCAGTGAATCTGGACTGGACTAACCCACGAGAGATAAAGTTTGCAAGATGTACTTTCATGCAGTCACAAGCAAGAGGTGACGTTTCCATGATGATCTTTATTCAGTATGAGAGTGCTGATCCCGTTCTCCAGTTGAGGGAGTGTGTTTAAATCAGGAGTCCAGTTGAAGCGGAGATTGTCTCCATC
>XR_004579356.1
CTGCCATCTTGGGGGATTTGGTTTTGGTGGGTTACTTTGGGTTTTTCTATATCTTAAAATTAAATGAGGGGTAGATGTCTTGTCTATGATCTTTAGGTCTAACCCATCCTCCATGGGCATTGGCAGGTGCAGTCGTTGTCCCAGAGCTACATAACACTGATTACTCTCAGTAAATCTACAGACAACAGGATCCTGAAACAGCAAAcctgcagaagaagaaaaaatcagaagccttgccagaaaggttcacaggacaTCAGGTTGAGACTAGAGCAGTGAATCTGGACTGGACTAACCCACGAGAGATAAAGTTTGCAAGATGTACTTTCATGCAGTCACAAGCAAGAGGTGACGTTTCCATGATGATCTTTATTCAGTATGAGAGTGCTGATCCCGTTCTCCAGTTGAGGGAGTGTGTTTAAATCAGGAGTCCAGTTGAAGCGGAGATTGTCTCCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254484 True 1815 lncRNA 0.43 2 21485240 21492497
XR_004579355.1 False 374 lncRNA 0.45 4 21492275 21493450
XR_004579356.1 False 458 lncRNA 0.44 4 21492275 21495618

Neighbor

gene id symbol gene type direction distance location
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding downstream 105024 21368754 ~ 21380216 (-)
arl9 arl9 coding downstream 118128 21360562 ~ 21367112 (-)
ints10 ints10,LOC105894096,LOC105894103 coding downstream 283371 21184962 ~ 21201869 (-)
klb klb coding downstream 310708 21165851 ~ 21174532 (-)
ube2ka ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169 coding downstream 322179 21157480 ~ 21163061 (-)
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding upstream 90480 21586098 ~ 21613875 (-)
LOC113546932 NA coding upstream 176544 21672162 ~ 21683433 (-)
LOC117598919 NA coding upstream 177204 21672822 ~ 21673330 (-)
LOC117598868 NA coding upstream 180020 21675638 ~ 21676807 (-)
LOC117598954 NA coding upstream 188406 21684024 ~ 21684645 (-)
G214947 NA non-coding downstream 16909 21419768 ~ 21468331 (-)
G214954 NA non-coding downstream 18377 21448473 ~ 21466863 (-)
G214956 NA non-coding downstream 20437 21464373 ~ 21464803 (-)
G214946 NA non-coding downstream 22889 21442889 ~ 21462351 (-)
G214941 NA non-coding downstream 27057 21406870 ~ 21458183 (-)
LOC117598822 NA non-coding upstream 811 21496429 ~ 21497974 (-)
LOC117598825 NA non-coding upstream 4932 21500550 ~ 21504305 (-)
G214958 LOC108280985,LOC108280981,LOC108280967,LOC108277599 non-coding upstream 21242 21516860 ~ 21558172 (-)
G214975 NA non-coding upstream 119266 21614884 ~ 21615115 (-)
G214970 NA non-coding upstream 120264 21615882 ~ 21616213 (-)
LOC113528016 thegl other downstream 126050 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 212733 21236802 ~ 21272507 (-)
fgf2 fgf2,LOC107717315 other downstream 457159 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 579969 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 1271611 20205339 ~ 20213629 (-)
G215187 NA other upstream 180653 21676271 ~ 22269092 (-)
G215188 NA other upstream 190086 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 199254 21694872 ~ 21695359 (-)
G215182 LOC108275153 other upstream 201042 21696660 ~ 22285703 (-)
LOC117598964 NA other upstream 202125 21697743 ~ 21698174 (-)

Expression


Co-expression Network