LOC117598823 (LOC108280967)


Basic Information

Item Value
gene id LOC117598823
gene name LOC108280967
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21436221 ~ 21556656 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254485
GAGAGAGCGCGTTTTTGCTTTGTTGATAGCTCTCGCTTGTTTATTACTGAATCAGCGATTATGATTTGTTAGTTGATCTTGAGTTATTTCTGATCGCTCCCTTTACTCTACATGTTGTATTTGCTCGTCTCTGATTTGACTCTGGCTGTTTGCCTGATTGTGTTGTGATGTGattccctttctctcttcaaGTGTTGATGGCTGGATTTATCTCTTGACTCATAGTGTTGAGACGAGGTTAGTATGTCACGTGACCTACACAAAGCAACATGTAGAATATCGCTTGTAGGAAAAACACTAGGACAGGAGCGGGAGCTAATGcttgtatttatgttttgttagtGAGCGTAGTTAGTTGGCGTTTACGCtgaagatttgtttttgttttctttttctttgtttagatTAGCGTTGAATTGGTTGCAgttagtttgtgtgttttgttttattaatttctttgctTTCAGCTCCGCTcacgtctcacactgttgttgtttttttaatgtatataactTTGTAAATATCATCTTCCTTACTCTTTGACGTTTCTATCGtcactgtaaatatgaaaagCAATCGAGTGTTTTGATGGACCTAATTCCTCACTAAAGTTTTTCTGATCAGCATTCTCGGTTTCTGTTTGATTCATTACTCCACACATCTCATCCCCTTTAGTAACAGACAGCCT
>TU254486
GAGAGAGCGCGTTTTTGCTTTGTTGATAGCTCTCGCTTGTTTATTACTGAATCAGCGATTATGATTTGTTAGTTGATCTTGAGTTATTTCTGATCGCTCCCTTTACTCTACATGTTGTATTTGCTCGTCTCTGATTTGACTCTGGCTGTTTGCCTGATTGTGTTGTGATGTGattccctttctctcttcaaGTGTTGATGGCTGGATTTATCTCTTGACTCATAGTGTTGAGACGAGgtgtgtaaagtgtatgttCCAGAGTCATTCCTCTCTGCA
>TU254496
ATAACTTGTAAATGTTGtagtgtgctgtgtgatgtgattagaAGTTGTGTGGTCCTACCTTCAGTGTTTAGCTGGAGAGTATAATTGCCTTTAAGAGTCCCGTTTGCATCAAAGGTGTTAAAGTGTATGTTCCAGAGTCATTCCTCTCTGCACTGGTTAGTATcatagttttactctcattaaCAAACTGCCATCTTGGGAGATTTGGTTTTGGTGGGTTACTTTGGATTTTTCTATAACTTATAATTAAACGAGGGGTAGATGTCTTGTCTATGATCTTTAGCTCTAACTTTTCCTCCAGGGGCATTGGCAGGTGCAGTCGTTGTCCCAGAGCTACATAACACTGATTACTCTCAGTAAATCTCCAGACAACAGGATCCTGAAACAGCAAACctgcagaggaagaaaaaaatcaggaacattcttaaaatttt
>TU254497
ATAACTTGTAAATGTTGtagtgtgctgtgtgatgtgattagaAGTTGTGTGGTCCTACCTTCAGTGTTTAGCTGGAGAGTATAATTGCCTTTAAGAGTCCCGTTTGCATCAAAGgtgtgtaaagtgtatgttCCAGAGTCGTTCCTCTCTGCACTGGTTAGTATCAtagttttattatcattaacaAACTGCCATCTTGGGGGATTTGGTTTTGGTGGGTTACTTTGGATTTTTCTATATCTTATAATTAAACGAGGGGTAGATGTCTTGTCTATGATCTTTAGCTCTAACTTTTCCTCCAGGGGCATTGGCAGGTGCAGTCGTTGTCCCAGAGCTACATAACACTGATTACTCTCAGTAAATCTACAGACAACAGGATCCTGAACCAACAAACctgcagaggaagaaaaaaatcaggaacaTTCTTAAatttttacacactgatattattaCACACCTCTTTATCCTCTAATAAATGACACTCCATTATTACAGGAGAGCTGGATTTAGTACTGTGCTACAGTtttcaataaagaaatgaaagtggGGAAAAATGAACATATTTGGAGAAAATCACTAAGAAGCaacctgaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctccaattgattatttactttttgattttatttggaaaaatggCAG
>TU254499
ATAACTTGTAAATGTTGtagtgtgctgtgtgatgtgattagaAGTTGTGTGGTCCTACCTTCAGTGTTTAGCTGGAGAGTATAATTGCCTTTAAGAGTCCCGTTTGCATCAAAGGTGTTAAAGTGTATGTTCCAGAGTCATTCCTCTCTGCACTGGTTAGTATcatagttttactctcattaaCAAACTGCCATCTTGGGAGATTTGGTTTTGGTGGGTTACTTTGGATTTTTCTATAACTTATAATTAAACGAGGGGTAGATGTCTTGTCTATGATCTTTAGCTCTAACTTTTCCTCCAGGGGCATTGGCAGGTGCAGTCGTTGTCCCAGAGCTACATAACACTGATTACTCTGATTAAAGCTACAGACAACAGGAT
>TU254501
CTTCAATGTTTAGCTGGAGAATATAATTGCCTTTAAGATTCCCGTTTGCATCAGTGGTGTCTAAAGTGTATGTTCCAGAGTCGTTCCTCTCTGCACTGGTTAGTATCATAGTTTTATTATCattaacaAACTGCCATCTTGGGGGATTTGGTTTTGGTGGGTTACTTTGGATTTTTCTATATCTTATAATTAAACGAGGGGTAGATGTCTTGTCTATGATCTTTAGCTCTAACTTTTCCTCCAGGGGCATTGGCAGGTGCAGTCGTTGTCCCAGAGCTACATAACACTGATTACTCTCAGTAAATCTACAGACAACAGGATCCTGAACCAACAAACctgcagaggaagaaaaaaatcaggaacaTTCTTAAatttttacacactgatattattaCACACCTCTTTATCCTCTAATAAATGACACTCCATTATTACAGGAGAGCTGGATTTAGTACTGTGCTACAGTtttcaataaagaaatgaaagtggGGAAAAATGAACATATTTGGAGAAAATCACTAAGAAGCaacctgaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctccaattgattatttactttttgattttatttggaaaaatggCAG
>XR_004579354.1
gcAGACTTGCCATattcactttcaacaggacccTACACATAAATAAGAGACTGTAGAATTGTTCCGTCCTGTAATATTGTGGGAGGTTTGTCTTTTGCTATCTGCCTTGTTTTGACTGTTACCACTTTTAGATCCTGTGATTGGACATGCGACCGGTCGATCTTCCCTGTGAACGTGATGACGACACCCATCTGTGAACCAATAAGGCACCCTCAGTCTACTATAAGGAAATGACGCAAGACGAGAGAGCGCGTTTTTGCTTTGTTGATAGCTCTCGCTTGTTTATTACTGAATCAGCGATTATGATTTGTTAGTTGATCTTGAGTTATTTCTGATCGCTCCCTTTACTCTACATGTTGTATTTGCTCGTCTCTGATTTGACTCTGGCTGTTTGCCTGATTGTGTTGTGATGTGattccctttctctcttcaaGTGTTGATGGCTGGATTTATCTCTTGACTCATAGTGTTGAGACGAGgtgtgtaaagtgtatgttCCAGAGTCATTCCTCTCTGCACTGGGGCATTGGCAGGTGCAGTCGTTGTCCCAGAGCTACATAACACTGATTACTCTCAGTAAATCTACAGACAACAGGATCCTGAAACAGCAAACctgcagaggaagaaaaaatcaggaacattcttaaaattttacacactgatattattaCACACCTCTTTATCCTCTAATAAATGACACTCCATTATTACAGGAGAGCTGGATTTAGTACTGTGCTACAGTtttcaataaagaaatgaaagtggGGGAAAAGTGAACATATTTGGAGAAAATCACTAAGAAGCaacctgaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctccaattgattatttactttttgattttatttggaaaaatggCAGCACAGgtgattaaatgataaataaatgatatctCAACTAACTGTTGTGTAACTCTTTATCTGAAGATTGTGTTCACAATGACAtgagcattttttcccccaacatcATCCAAAAGACACTTTTTGATTATATACAAAGTATGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254485 False 688 lncRNA 0.38 2 21436221 21447588
TU254486 False 276 lncRNA 0.41 2 21446601 21447588
TU254496 False 434 lncRNA 0.39 2 21515927 21556656
TU254497 False 674 lncRNA 0.37 3 21446081 21556656
TU254499 False 378 lncRNA 0.40 2 21519093 21556656
TU254501 False 616 lncRNA 0.37 3 21446081 21519413
XR_004579354.1 True 1038 lncRNA 0.39 3 21445936 21447830

Neighbor

gene id symbol gene type direction distance location
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding downstream 56005 21368754 ~ 21380216 (-)
arl9 arl9 coding downstream 69109 21360562 ~ 21367112 (-)
ints10 ints10,LOC105894096,LOC105894103 coding downstream 234352 21184962 ~ 21201869 (-)
klb klb coding downstream 261689 21165851 ~ 21174532 (-)
ube2ka ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169 coding downstream 273160 21157480 ~ 21163061 (-)
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding upstream 29442 21586098 ~ 21613875 (-)
LOC113546932 NA coding upstream 115506 21672162 ~ 21683433 (-)
LOC117598919 NA coding upstream 116166 21672822 ~ 21673330 (-)
LOC117598868 NA coding upstream 118982 21675638 ~ 21676807 (-)
LOC117598954 NA coding upstream 127368 21684024 ~ 21684645 (-)
G214933 NA non-coding downstream 76322 21359697 ~ 21359899 (-)
G214917 NA non-coding downstream 106546 21327660 ~ 21329675 (-)
G214626 NA non-coding downstream 532384 20903098 ~ 20903837 (-)
G214526 NA non-coding downstream 594587 20841431 ~ 20841634 (-)
G214493 NA non-coding downstream 654519 20778765 ~ 20781702 (-)
G214975 NA non-coding upstream 58228 21614884 ~ 21615115 (-)
G214970 NA non-coding upstream 59226 21615882 ~ 21616213 (-)
G214976 NA non-coding upstream 59946 21616602 ~ 21616832 (-)
G214977 NA non-coding upstream 64022 21620678 ~ 21621921 (-)
G214978 rest,LOC106604639 non-coding upstream 71473 21628129 ~ 21631867 (-)
LOC113528016 thegl other downstream 77031 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 163714 21236802 ~ 21272507 (-)
fgf2 fgf2,LOC107717315 other downstream 408140 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 530950 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 1222592 20205339 ~ 20213629 (-)
G215187 NA other upstream 119615 21676271 ~ 22269092 (-)
G215188 NA other upstream 129048 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 138216 21694872 ~ 21695359 (-)
G215182 LOC108275153 other upstream 140004 21696660 ~ 22285703 (-)
LOC117598964 NA other upstream 141087 21697743 ~ 21698174 (-)

Expression


Co-expression Network