G214949 (LOC108280967,LOC108280981,LOC108277545)


Basic Information

Item Value
gene id G214949
gene name LOC108280967,LOC108280981,LOC108277545
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21435594 ~ 21505792 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254491
TTTAAAATTCCCGTTTGCATCAAAGGTGACTAAAGTGTATGTTCCAGAGTCATTCCTCTCTGCACTGGTTAGTATcatagttttactctcattaaCAAACTGCCATCTTGGGGGATTTGGTTTTGGTGGGTTACTTTGGATTTTTCTATAACTTATAATTAAATGAGAGGTAGATGTCTTGTCTATGATCTTTAGCTCTAACTTTTCCTCCAGGGGCATTGGCAGGTGCAGTCGTTGTCCCAGAGCTACATAACACTGATTACTCTCAGTAAATCTACAGACAACAGGATCCTGAACCAGCAAACctgcagaggaagaaaaaaatcaggaacattcttaaaattttacacactgatattattaCACACCTCTTTATCCTCTAATAAAT
>TU254492
TGCCATCTTGGGGGATTTGGTTTTGGTGGGTTACTTTGGGTTTTTCTATATCTTAAAATTAAATGAGGGGTAGATGTCTTGTCTATGATCTTTAGCTCTAACTTTTCCTCCAGGGGCATTGGCAGGTGCAGTCGTTGTCCCAGAGCTACATAACACTGATTACTCTCAGTAAATCTACAGACAACAGGATCCTGAACCAGCAAACctgcagaggaagaaaaaaatcaggaacattcttaaaattttacacactgatattattaCACACCTCTTTATCCTCTAATAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254491 True 388 lncRNA 0.37 3 21435594 21505792
TU254492 False 288 lncRNA 0.39 2 21435594 21495617

Neighbor

gene id symbol gene type direction distance location
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding downstream 55378 21368754 ~ 21380216 (-)
arl9 arl9 coding downstream 68482 21360562 ~ 21367112 (-)
ints10 ints10,LOC105894096,LOC105894103 coding downstream 233725 21184962 ~ 21201869 (-)
klb klb coding downstream 261062 21165851 ~ 21174532 (-)
ube2ka ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169 coding downstream 272533 21157480 ~ 21163061 (-)
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding upstream 80306 21586098 ~ 21613875 (-)
LOC113546932 NA coding upstream 166370 21672162 ~ 21683433 (-)
LOC117598919 NA coding upstream 167030 21672822 ~ 21673330 (-)
LOC117598868 NA coding upstream 169846 21675638 ~ 21676807 (-)
LOC117598954 NA coding upstream 178232 21684024 ~ 21684645 (-)
G214933 NA non-coding downstream 75695 21359697 ~ 21359899 (-)
G214917 NA non-coding downstream 105919 21327660 ~ 21329675 (-)
G214626 NA non-coding downstream 531757 20903098 ~ 20903837 (-)
G214526 NA non-coding downstream 593960 20841431 ~ 20841634 (-)
G214493 NA non-coding downstream 653892 20778765 ~ 20781702 (-)
G214958 LOC108280985,LOC108280981,LOC108280967,LOC108277599 non-coding upstream 11068 21516860 ~ 21558172 (-)
G214975 NA non-coding upstream 109092 21614884 ~ 21615115 (-)
G214970 NA non-coding upstream 110090 21615882 ~ 21616213 (-)
G214976 NA non-coding upstream 110810 21616602 ~ 21616832 (-)
G214977 NA non-coding upstream 114886 21620678 ~ 21621921 (-)
LOC113528016 thegl other downstream 76404 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 163087 21236802 ~ 21272507 (-)
fgf2 fgf2,LOC107717315 other downstream 407513 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 530323 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 1221965 20205339 ~ 20213629 (-)
G215187 NA other upstream 170479 21676271 ~ 22269092 (-)
G215188 NA other upstream 179912 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 189080 21694872 ~ 21695359 (-)
G215182 LOC108275153 other upstream 190868 21696660 ~ 22285703 (-)
LOC117598964 NA other upstream 191951 21697743 ~ 21698174 (-)

Expression


Co-expression Network