G214978 (rest,LOC106604639)


Basic Information

Item Value
gene id G214978
gene name rest,LOC106604639
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21628129 ~ 21631867 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254528
CATACTAGTACATTTTCTAAAACGCAGATTTCCTccacaaaacatttcaacaaaTCCGATGTTAGTACTTGTACCTACTATGAACTATAAAGCACTCTAGATTACATCTGTAAAAGAAATATGCTATTTCTTACATCCATATTTAAGTAAAATCTCCAAGAAACATTTATAGTAATAGTAATTCTAATCTATCCATCTAATcgaagttttattttttacaaaagaGAGTTAGATGCAGGGCAGGGGAATTTTTCCACTTTGGTATACCCAATATATAATATTgcacttaataaaaataataataataaaaaatctagtttttttttttttttttttaaagacagacATGTTGATTTAGATGGCCATGAAAATCAAGCATGGTTCTATTCCACACACATCAGATCAGTGGCACAAGGTTAGAATCATAATTCAGTTTGATGACAATTAGCAGAGAAAGCAGGAAAGAGAAAGTCAAACTAAcaacaaaaagtacaaaattaccaaaggggaaaaaaaaaaacgattgtcagaagcattaaaaaaaaaaggaaaaacaacaactggAGTGACATATACAGTGTAAAGCTCAACGTTTTTCTCCCTACCCCATATGTAGTTTGCTTGTTTAGCTTTGCACTTGAGCTACGAAGTTCACATTGCTAACAAATAAAAGAAGCTTACGGTATACAGTCCAAGGGGAACAAtgtgtgcatttcatttttggccaaactttTCTTTTAAGGAAACAAGAGCGGGAGACAGTCATAAACAGTCTTAAACAATCTTTGGACCGAATTATGAAGCTGAAAAAGAACAGAATATTCAGAATCTCCACTCGAGTGCTCTAAGATAACTTTTAAGATGAAAGTCAATGTACAAAGTAACACTTGCTTGTTTCTACATATTACGATTAATTCCCATAGGATTACATAATAAGATAATTATCAGACATGCGCTGATATCACAGTTTGCAATattatcatgattttgtgtAACAGTTCTGAGAACATTCACAGAACTTTTGTCTGATAAATGGAATTATGCAATTACCTTCTGAGAGGGATACACgcagcatttttttcttcaaatttgtCCAAAACAAGCAACCATACAAGACAGTTACCCTTAAATAAAGGCTGCTTTCTTCAGGAGTGCTAACAACAGGCCTCAGTTATccgtctttaaaaaaaaacgttgtGTGCAAATATCTTCATAggccaaactgaacaaaaaaaaattccaggcAGATTTACAAAAGCTCAGttaacgctgattttcttcatattctgGTGCACAttttgataaatgccaatcttCCAGAAATGACCAACCGCATTTATGGCACAGCTGATTgacatttagccacacccaaaaagctcacagagagctgtaaatgacaaaatgatgattAAATGGTGAAGAGTGCCTCCTAAGCACGGTGTATGCTAAATCTTCCAACTGTTGTCTCTGCAAAAAGAATGCTGAGACCTTACGTCAAGGTGACTAGAGTCAAGGCggcctttttttaaatgatagtCCAAGTCCAGCTGCCTTGAATTATGGTTACTGCTGGACACTTTTAAATGACCCAGATGACTGAAAACCTTAAGTAGAAATGAAGTCTACTTGTTCCCCTGTGTCGCAGTGTCCAGGTAATAGACATTAACCAGATGGCGATTGAGATGCCGCCTGTAGTCCATCTCCAGAGGGAACGTGCGGTCACAGAACACGCATGTGTGGCTGAGCAGTTGCGTGGGTGACGGAAGTTCTTCAGTCGGTGTTTCCGGAAGCTTCCCGTTGAGCCCGGAGTCGTAACTTACCTCCGAGGCACAGTCGCTGATGTCACTTCCTCCGTCGTGGCTGTGGATGCCCTCGTCGTCTTCACCGTCCTGAGATTTGCTACACGGAGGTTTGGACAAGTCCAGTGTTGGACTATCCGTCCCACTATCAATATCTGAAGATGTCTGTGCTTCCGCGGTGCCCTTTCCTTCAGTGGTGGCCTTCACTCTTGTGACTTTGTCTTCTGAAGACGGCTTCTCCGATAGATTTTTTGTTATGCTCAGCTCCTCAGAAGTGTGAGACACTTTCTCTGTTGAAATTTGATCTTTTATTGGGCCAGATTGCACTTTTTCAGGCTTGGAGGAACATTCCAGAGCTTTTGCTGCCTTAACCTTAACACTAACCTCCAgcttgtttgtctttctgttttgcCTGCCACTGCCCTTTGACCTCTTCACTTCTCCAGGTGTGCTCATGCTTGTGCATGGGCTGTTTGTAACCTTCGCCTTCCTGCGTTTGGCTTTCTCTGCCTGAGGAGAAGGTGCACACTCTGCTTTTTTGCGTTTCACCGTTTTCGTCTCGGCTTTCTCGCAATTCTGAGACTTCTCCATATCACAATTCACTGTTCCTGTATGTTTCTTGGTTGCTTTCCTGGCCATTTTGGAACCTTTAACATTTTCCACCTCTCTTTTCTGTACATCATATTTCTGAAGTTTGCTTTCCTtctccagcctctctctttctctccgttcctcctcctccttctgctTCAGCTCCTTCtcactcatttctctctctactctctcactttctcttctttcctcctcctctttcgctctcatttctctctccagCCTTTCCCTTTCCCTCTGttcctcctcctttttctctttctccctcatttctttctcaaccttctctctttctctccttttttcctgCTCCTTCTGCTTCAgtttcttctctctcatttctagctcaactctttctttctcctgtcGCTCTCTTGCCgttctcttttcctcctcctccctctgcttatgttctttctctttcttcattctCTCCAGACTTTCATCTTCctgcctctttctttctctcctttcctcctcctctctctgcttctgCTCCTTTGCCCTCATTTCTTTCTCCATCCTTTGAGTCTGCTGCCTCTTCTCAAGATCTGTTCTGTTTTCCTCTTCAGAACCATCATGATTTTTGGTGAGTGTCTCTTTCGTTTCCTTTGCagccttttcttcttttttagcTCGACTTTTAGTGACTCTGTCTGAAGATTTAGCAACTTTCTCTGCGTTTTTCACCTCCttgtctttctttccatcttgtTTCTCGACACAGGGGACAGTTTCTTTGATTCTCGCTTTCTTGCTGcttgtttcttttccttcatttcttGGTGCAGCTCTTTTCTCTGCTCTCTTCTCACACGATTTTTCTTTTGTGGGTTCGGAAGCGGGTTTTTTGGCACTCTCACCATCCAAATTCGTCTTTCCACTCTTTTTAATGGAGAGGTTGATGGGGCCTACGATTGAATCGGCATCCTCGGACACCTCTGCTTTTCGTCTATCCCTTGTCCTTGGTTCTGAAACTGGCTTCAAATCATCCCCGTCTGCCTTCTTCACCCTCAGCCTGACCTTGGACACGTCCATGGAGATATCTGAGCATCCCGGGTGCCTGGACTTGATGTGGTACTGCAGGTTGCATTTCTTGGATGCAGCATACTTGCAGACGGGGCAAAGAAACTGCCTTGGATTGACATGCAGCTCCACATGCTTTTTGAAGTTGCTGCGATCGGCTGTTTTGTACTGGCAGTAAGGACAGCTGAGCGGCTTGGGTCCGTTATGCACCTGCCTGGCATGACGTGTCACCTCGTGTTGATTGGCTGCCAAATAGCTGCAGCTGTCGCACTTGAAC

Function

symbol description
rest Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including negative regulation of neuron maturation; negative regulation of smoothened signaling pathway; and nervous system development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in ectoderm; endoderm; fin; head mesenchyme; and nervous system. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 27; gingival fibromatosis 5; and nephroblastoma. Orthologous to human REST (RE1 silencing transcription factor).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254528 True 3714 lncRNA 0.42 2 21628129 21631867

Neighbor

gene id symbol gene type direction distance location
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding downstream 14254 21586098 ~ 21613875 (-)
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding downstream 247913 21368754 ~ 21380216 (-)
arl9 arl9 coding downstream 261017 21360562 ~ 21367112 (-)
ints10 ints10,LOC105894096,LOC105894103 coding downstream 426260 21184962 ~ 21201869 (-)
klb klb coding downstream 453597 21165851 ~ 21174532 (-)
LOC113546932 NA coding upstream 40295 21672162 ~ 21683433 (-)
LOC117598919 NA coding upstream 40955 21672822 ~ 21673330 (-)
LOC117598868 NA coding upstream 43771 21675638 ~ 21676807 (-)
LOC117598954 NA coding upstream 52157 21684024 ~ 21684645 (-)
LOC117598776 NA coding upstream 53830 21685697 ~ 21691576 (-)
G214977 NA non-coding downstream 6208 21620678 ~ 21621921 (-)
G214976 NA non-coding downstream 11297 21616602 ~ 21616832 (-)
G214970 NA non-coding downstream 11916 21615882 ~ 21616213 (-)
G214975 NA non-coding downstream 13014 21614884 ~ 21615115 (-)
G214958 LOC108280985,LOC108280981,LOC108280967,LOC108277599 non-coding downstream 69957 21516860 ~ 21558172 (-)
G214980 NA non-coding upstream 2791 21634658 ~ 21634864 (-)
G215168 NA non-coding upstream 13252 21645119 ~ 21645894 (-)
G215169 NA non-coding upstream 20323 21652190 ~ 22026318 (-)
G215194 NA non-coding upstream 91604 21723471 ~ 22134451 (-)
G215217 NA non-coding upstream 390219 22022086 ~ 22078908 (-)
LOC113528016 thegl other downstream 268939 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 355622 21236802 ~ 21272507 (-)
fgf2 fgf2,LOC107717315 other downstream 600048 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 722858 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 1414500 20205339 ~ 20213629 (-)
G215187 NA other upstream 44404 21676271 ~ 22269092 (-)
G215188 NA other upstream 53837 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 63005 21694872 ~ 21695359 (-)
G215182 LOC108275153 other upstream 64793 21696660 ~ 22285703 (-)
LOC117598964 NA other upstream 65876 21697743 ~ 21698174 (-)

Expression


Co-expression Network