G215015 (LOC108275153)


Basic Information

Item Value
gene id G215015
gene name LOC108275153
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21646080 ~ 21649152 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254580
aacacacaccatgatctctacatccctactgctgctgctgctggcagccgtacactgtgttcactgtgatgagctgatccagaccggatccacagtattaacccctggtcagtcaatgactctgacctgtaAAGTGTCTGGATATTCATTAACTGATAGCAGCTACTGGACACATTGGATaggacaacctgcaggaaaaacactggagtataTCGGACAAATATCTGGTGGTGGTAGCACGTACtacagtgagaaactgaaaagcaggtttcaggtttccagagacacgtccagcagcacagtaacattaacagggcagaagatgcagactgaagacacagctgtgtattactgcgctcgtgaaccacagtgagacagatcaacaacatccctgtacaaaaacacctCATACAGTGCAAATTATAACAgaatgtccacaagacacaacACTTATCTATCCAAgtctaaccaaaaaaaaaaattaatctcaTAAATGACAAGAAAGAGATGCaagttagttatttttataaaatactttGTAGTGTAGATTTTAAACCATAATGCTATATCTCTAACATTTctgcacattatacacactattATAATTAGACGACTAACAAGAACTTGTTATACTGCAGTATCTTTGGCTAACAATAATTATGTCAACAAATTAGACTTTGTGACAAAGTATGAGAGCATTTTGTCATGACTTTTAAGAGAGGTAGAATTCTTCCATTATCATGATCCCAATATCCTCAAGCATAGATAATAATTATCATGCTAAATgtagtatttaatatttgttgTGAATTTCACTgacacttttatattttattgaaaattataGTATTTCATAAAGAGGCTTCTGTTTGATTAAAAAGCCAAATATCCTCCATAAGATGAATCTCCTCCTTAtgatttaaatactttttaaatacattctcctcccatcatcagcagataagcaaatacaagcgtcagggctggatatcactctatttatgtgatgtgatggtctctgttaaactttggagaacagagaagaccccagtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagtgtctctccatcccctgcaaGGTTTCATATTCACTTACGAGTGATGGCACAGCTTGGAcccgacaacctgcaggaaaagctctggagtggattggaTACATCAGATACGATGGGGGTACAGattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcaaggacagaatctgcaaactgaagacacagctgtgtattactgcgcagGAGgctcacagtgacacagaatagtggattccccttacaaaaactttgagaCATGTTAGAGACATCCTCTCAATGCCACTAAtaaacctctcacacacacttttactttcttcCACTGGATTCAAGTTTTAATAGTGTGtcattattaaacacacaatgtacttttttaaatcaaagaatTGCATAAATAGTATTTTTTCAAGAGTTTTAATTCAAAAcccttattaattaattttacagaaattttGAACAGCAGTTggaataaatgcttaaaataataaGCAGTTTTAACTGATTAACTAATCCCCACTTTACAGACACTTCAGCCCAAACATTtagatcatttaatcatttaacaaaaactaatacaaacGTTTACTCAGTTCATAGTTATTAAGAATATATTATTCATctttttagctgttttaaatgaagtgtACCTGAATGTCCAGTTAACATTCCACATGACAAGATTCTTGTCTTGGGATTGTCAACTGGAGGAACGCTGTCACAGGAAATCATTTCAGCAAAAAATACTAGTGCAGAGCAGATAAAGGTTGGGAGTAATTTTTCagtgggtaatttttttttactcagtgtGGTCTGATTAGAGAACTGACGACATATCTTGTTTTAAGTTTATGTTTAAAGGTAATTGAAGAGAGTATGATGCATGTATTTTACGCTTCAATATTGACGTGTCatatctgttcagagtccatggcTCTACTAACATGATAACGTGAAAcaccactatgaaacaaaacacttcaaatTCTCTTATTTATAgtgaagaattaaaaaaaaatacttgaatACACCTTGAAGCTATACAGTTAAATTGGTAACATGCTTTGAGCTACATGCCACGTATTATTCCTACCTGGTAGGCGGTGAGCAGCTTGCTCCTCCACTGGGCCTGTGGCAGGTCGTGGACGGAGAGGCGCAGGTTACGGTTGCTGTCTTTAAACGGGAGAACGTGTGGCTCGTCAATGAGGCGACCACCAAGCTGCGCCTCCATCTGCATCACCTCCTACAGAGacaacacaacagcaaacacagCCGAGTTTCAGGTACGGTCCACCACCGAGAGCTGTTTTCTAAATGTAGATGATCCATATTATTCAAGGACACACTGCTGTCTTAAAGCAACATAACTCctttgtgtagctgtgtgaAAAATGCttgtatgtataaaaaatatccACCACATTTACATGTGGTAATAAGCACTCTGGGTCTACATAAGTCAGTCAATGATcactttttgttaaaaatgaaagcaaaaaacatGATTCTACAATCTGAGGTTCCCGAGCTGCACCGAGTCGTCCTGATGATCCTGTAATAGTAACTCGCAGTCTGTCCTCTACTAAGAGTTAGAATTGGTTTGGGAATTTGCGCTAATACATCAAATGTCACAACCTTAGGCAGGAAAGAAGTCCGACTTGTGCTGCAGCAAATCAGGAGAGGAAGACAGTCAATAATAGAAAAGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254580 True 2903 TUCP 0.38 3 21646080 21649152

Neighbor

gene id symbol gene type direction distance location
rest rest coding upstream 14174 21620631 ~ 21631906 (+)
LOC113540583 NA coding upstream 99988 21541990 ~ 21546092 (+)
LOC117598820 LOC108280985,LOC108277545 coding upstream 165638 21454118 ~ 21480442 (+)
LOC117598821 NA coding upstream 215622 21405340 ~ 21430458 (+)
LOC113527856 NA coding upstream 243356 21390903 ~ 21402724 (+)
LOC117598992 NA coding downstream 9350 21658502 ~ 21659107 (+)
LOC117599000 NA coding downstream 11273 21660425 ~ 21661039 (+)
LOC117598848 NA coding downstream 13943 21663095 ~ 21663540 (+)
LOC117598774 NA coding downstream 15442 21664594 ~ 21665744 (+)
LOC117598775 NA coding downstream 19189 21668341 ~ 21668882 (+)
G214829 NA non-coding upstream 11006 21634851 ~ 21635074 (+)
G214825 NA non-coding upstream 28786 21617095 ~ 21617294 (+)
G214747 LOC108280967 non-coding upstream 89679 21551549 ~ 21556401 (+)
LOC117598827 LOC108280967,LOC108277545,LOC108277574 non-coding upstream 140294 21502137 ~ 21505786 (+)
G214807 NA non-coding upstream 171117 21474633 ~ 21474963 (+)
G215042 NA non-coding downstream 7109 21656261 ~ 21656835 (+)
G215055 NA non-coding downstream 68540 21717692 ~ 21718076 (+)
G215059 NA non-coding downstream 75459 21724611 ~ 22137078 (+)
G215064 NA non-coding downstream 125071 21774223 ~ 21807343 (+)
LOC117598973 NA non-coding downstream 238879 21888031 ~ 21888800 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other upstream 80704 21514573 ~ 21565376 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other upstream 133040 21482022 ~ 21513040 (+)
hopx hopx other upstream 296994 21340416 ~ 21349086 (+)
nudt6 nudt6 other upstream 621993 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1472728 20022509 ~ 20173352 (+)
G215022 NA other downstream 13932 21663084 ~ 22000809 (+)
G215010 LOC108275153 other downstream 15406 21664558 ~ 21711769 (+)
G215008 LOC108275153 other downstream 62042 21711194 ~ 21721059 (+)
LOC117598918 LOC108275153 other downstream 62163 21711315 ~ 21711778 (+)
LOC117598875 NA other downstream 64777 21713929 ~ 21714624 (+)

Expression


Co-expression Network