G215035


Basic Information

Item Value
gene id G215035
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22015818 ~ 22020735 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254600
cagatattgtgtgagatatcaccatgtgttttcctccacagatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaggtttcatattcagttacgagCTATGGTACAGGTTGgatccgacaacctgcaggaaaagctctggagtggattggaGTTATCTATTACAATGGGGTTACAGcttacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaaaaggctcacagtgacacagaatagtggattccccttacaaaaactttgagacatgttagagacatcctctcaatgccactaataaaccatctcactcacacttttactttcttcCACTGAATCAAGTTTTAATAGTGTGTGtcattattaaacacacaatgtacttttttaaatcaaagaatTGCATAAATAGTATTTTTTCAAGAGTTTTAATTCACAAcccttattaattaattgtacaGAAATTTTGAACAGCAGTTggaataaatgcttaaaataataaGCAGTTTTAACTGATTAACTAATCCCCACTTTACAGACACTTCAGCCCAAACATTtagatcatttaatcatttaacaaaaactaatacaaacGTTTACTCAGTTCATAGTTATTAAGAATATATTATTCATctttttagctgttttaaatgaaatgcatctgAATATCCAGTTAACATTCCACTTGCTTCACATGTTTGAAAGCAGTTTGTAACTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254600 True 836 lncRNA 0.36 2 22015818 22020735

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 346936 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 350074 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 352278 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 354779 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 356711 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 516767 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 594124 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 713000 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 760631 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1120979 23141714 ~ 23143760 (+)
G215069 NA non-coding upstream 20753 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 49585 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 102469 21912612 ~ 21913349 (+)
LOC117598790 NA non-coding upstream 103999 21911288 ~ 21911819 (+)
LOC117598935 NA non-coding upstream 105722 21909653 ~ 21910096 (+)
G215093 NA non-coding downstream 37609 22058344 ~ 22059756 (+)
G215095 NA non-coding downstream 56755 22077490 ~ 22133009 (+)
G215107 NA non-coding downstream 112467 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 116560 22137295 ~ 22139333 (+)
LOC117598906 NA non-coding downstream 120049 22140784 ~ 22141255 (+)
LOC117598878 NA other upstream 1211 22014103 ~ 22014607 (+)
LOC117598887 NA other upstream 6519 22008490 ~ 22009299 (+)
LOC117598797 NA other upstream 10235 22004952 ~ 22005583 (+)
LOC117598796 NA other upstream 11871 22003426 ~ 22003947 (+)
G215022 NA other upstream 15009 21663084 ~ 22000809 (+)
LOC117598798 NA other downstream 5979 22026714 ~ 22031629 (+)
LOC117598799 NA other downstream 14943 22035678 ~ 22037246 (+)
LOC117598942 NA other downstream 16600 22037335 ~ 22037911 (+)
G214998 LOC108275153 other downstream 18917 22039652 ~ 22064997 (+)
LOC117598925 NA other downstream 19071 22039806 ~ 22040250 (+)

Expression


Co-expression Network