G215042


Basic Information

Item Value
gene id G215042
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21656261 ~ 21656835 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254607
ccatgatctctacatccctactgctgctgctgctggcagccgcacactgtgttcactgtgttgagctgatccagaccggatccacagtattaacccctggtcagtcaatgactctgacctgtaAAGTGTCTGGATATTCATTAACTGACAGAAGCTACTGTACAGGCTGGatacgacaacctgcaggaaaaactCTGGAGTGGATTGGATACATCAATAAAGATGGGAGTACATATTACAGtgacaaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcaaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaagTCACAAAGTGACCCAGAATAGTGGATtccccttacaaaaactttgagaCATGTTAGAGACATCCTCTCAATGGCACTAATAAATCATCTCACTCAAAATTTTACCTTCTCCTATTTGAATGAAGTTGTAATAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254607 True 487 lncRNA 0.42 2 21656261 21656835

Neighbor

gene id symbol gene type direction distance location
LOC117598748 NA coding upstream 8458 21647236 ~ 21647803 (+)
LOC117598747 NA coding upstream 9638 21645852 ~ 21646623 (+)
rest rest coding upstream 24355 21620631 ~ 21631906 (+)
LOC113540583 NA coding upstream 110169 21541990 ~ 21546092 (+)
LOC117598820 LOC108280985,LOC108277545 coding upstream 175819 21454118 ~ 21480442 (+)
LOC117598992 NA coding downstream 1667 21658502 ~ 21659107 (+)
LOC117599000 NA coding downstream 3590 21660425 ~ 21661039 (+)
LOC117598848 NA coding downstream 6260 21663095 ~ 21663540 (+)
LOC117598774 NA coding downstream 7759 21664594 ~ 21665744 (+)
LOC117598775 NA coding downstream 11506 21668341 ~ 21668882 (+)
G214829 NA non-coding upstream 21187 21634851 ~ 21635074 (+)
G214825 NA non-coding upstream 38967 21617095 ~ 21617294 (+)
G214747 LOC108280967 non-coding upstream 99860 21551549 ~ 21556401 (+)
LOC117598827 LOC108280967,LOC108277545,LOC108277574 non-coding upstream 150475 21502137 ~ 21505786 (+)
G214807 NA non-coding upstream 181298 21474633 ~ 21474963 (+)
G215055 NA non-coding downstream 60857 21717692 ~ 21718076 (+)
G215059 NA non-coding downstream 67776 21724611 ~ 22137078 (+)
G215064 NA non-coding downstream 117388 21774223 ~ 21807343 (+)
LOC117598973 NA non-coding downstream 231196 21888031 ~ 21888800 (+)
LOC117598789 NA non-coding downstream 234763 21891598 ~ 21892131 (+)
G215015 LOC108275153 other upstream 7109 21646080 ~ 21649152 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other upstream 90885 21514573 ~ 21565376 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other upstream 143221 21482022 ~ 21513040 (+)
hopx hopx other upstream 307175 21340416 ~ 21349086 (+)
nudt6 nudt6 other upstream 632174 21011774 ~ 21024087 (+)
G215022 NA other downstream 6249 21663084 ~ 22000809 (+)
G215010 LOC108275153 other downstream 7723 21664558 ~ 21711769 (+)
G215008 LOC108275153 other downstream 54359 21711194 ~ 21721059 (+)
LOC117598918 LOC108275153 other downstream 54480 21711315 ~ 21711778 (+)
LOC117598875 NA other downstream 57094 21713929 ~ 21714624 (+)

Expression


Co-expression Network