G215093


Basic Information

Item Value
gene id G215093
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22058344 ~ 22059756 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254686
ccggttttaaattaatagtctgaatttctagcctgatattttcaattttaccattgaaaaaattcatgaagtcatcgctgctatataatgattgtgtgcgtgtttctattgtggtcttattcctagttaattttgctacagtattaaataagaatctaggattatttctgttatcttcaattagggtggagagatacattgatctagcagcactaagagctttcttatagctcaataggctctccttccatgctatttgaaatactaccaagttagtttgacgccatttacgttctagttttcgagtggtctgttttaaagttcgtgtgtgatcgctataccagggtgctagctttttctccctaattatttttcttttaagtggagctaccttatctagcgagttgcagaacgttgattctaaacattcagttgcctggtcaagttgttcgggatcagacggtgatccaatcatggttgataaatctgggagattactgataaaactttgtgcagttgttgacgtgaacgtacgtttgacatggtgacgtggcaaggtgcatatactatgattaatacacattttaaatgagatgaggtaatgatctgagatagcttcagagctcggggaacagacacagtctcaatacggtggaacctaagtgacgactcagtgcagctagcagacggtcggtttagcctgcttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254686 True 707 lncRNA 0.39 2 22058344 22059756

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 389462 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 392600 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 394804 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 397305 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 399237 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 477746 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 555103 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 673979 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 721610 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1081958 23141714 ~ 23143760 (+)
G215035 NA non-coding upstream 37609 22015818 ~ 22020735 (+)
G215069 NA non-coding upstream 63279 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 92111 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 144995 21912612 ~ 21913349 (+)
LOC117598790 NA non-coding upstream 146525 21911288 ~ 21911819 (+)
G215095 NA non-coding downstream 17734 22077490 ~ 22133009 (+)
G215107 NA non-coding downstream 73446 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 77539 22137295 ~ 22139333 (+)
LOC117598906 NA non-coding downstream 81028 22140784 ~ 22141255 (+)
LOC117598961 NA non-coding downstream 82329 22142085 ~ 22142516 (+)
LOC117598904 NA other upstream 3995 22053883 ~ 22054349 (+)
LOC117598951 NA other upstream 7127 22050688 ~ 22051217 (+)
LOC117598800 NA other upstream 7748 22049005 ~ 22050596 (+)
LOC117598960 NA other upstream 11366 22046529 ~ 22046978 (+)
G215082 NA other upstream 13739 22044131 ~ 22044605 (+)
LOC117598916 NA other downstream 3518 22063274 ~ 22063903 (+)
LOC117598943 NA other downstream 4806 22064562 ~ 22065083 (+)
LOC117598890 NA other downstream 9199 22068955 ~ 22069825 (+)
LOC117598801 NA other downstream 13305 22073061 ~ 22073569 (+)
LOC117598965 LOC108275153 other downstream 15649 22075405 ~ 22087412 (+)

Expression


Co-expression Network