G215107


Basic Information

Item Value
gene id G215107
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22133202 ~ 22401320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254702
CGCTAATACATCAAATGTCACAACCTTAGGCAGGAAAGAAGTCCGACTGCTGGCAGGTGCTGCAGCAAATCAGGAGAGGAAGACAGTCAATAATAGAAAAACTGATTTAGGAGTAGAACAGGTAAGACATTGACTTGTTCCCTTATTTGGTGGGAAGCTAGTGAGTATTCTGATTTGTCCTCATTGTGGAGTTTGTATCATTAGCCAGTTGTGAAAGAGATATGCTCAGTTAGCAAGTGGATaaccttttgtgtttgtttggggtGTTGTTTGGGATCATCATCCctcaatttgtttttaattttagagTTAGCAAATAtttctcctttcctttccctATCAGCTTTAAATGCATGACTTTTACAGTTGATAACCACCAGTTTGCCAACTGGAGGAGGACTTCAGTTCTGTTTGTACAAACATGTACAAAGCTAAAATTATTAGATTAACACTATAGAGTACATGTGTGGAATTGAACAGTAATTGGGCTAAAATTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254702 True 499 lncRNA 0.38 2 22133202 22401320

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 464320 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 467458 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 469662 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 472163 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 474095 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 136182 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 213539 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 332415 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 380046 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 740394 23141714 ~ 23143760 (+)
G215095 NA non-coding upstream 193 22077490 ~ 22133009 (+)
G215093 NA non-coding upstream 73446 22058344 ~ 22059756 (+)
G215035 NA non-coding upstream 112467 22015818 ~ 22020735 (+)
G215069 NA non-coding upstream 138137 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 166969 21923978 ~ 21966233 (+)
G215153 NA non-coding downstream 630 22401950 ~ 22405524 (+)
LOC117598850 NA non-coding downstream 93888 22495208 ~ 22535776 (+)
LOC117595678 NA non-coding downstream 99563 22500883 ~ 22501370 (+)
G215294 NA non-coding downstream 323367 22724687 ~ 22726646 (+)
G215336 NA non-coding downstream 334451 22735771 ~ 22735986 (+)
LOC117598947 NA other upstream 2020 22126928 ~ 22131182 (+)
LOC117598959 LOC108275153 other upstream 12739 22119975 ~ 22120463 (+)
G215072 NA other upstream 19249 21888031 ~ 22113953 (+)
LOC117598804 NA other upstream 20417 22111931 ~ 22112785 (+)
LOC117598936 NA other upstream 22381 22110378 ~ 22110821 (+)
LOC113546930 LOC108275153 other downstream 61780 22463100 ~ 22490911 (+)
LOC113546936 NA other downstream 68859 22470179 ~ 22470678 (+)
higd2a higd2a other downstream 364494 22765814 ~ 22769636 (+)
trnat-cgu_7 NA other downstream 378966 22780286 ~ 22780576 (+)
G215347 NA other downstream 434344 22835664 ~ 22835902 (+)

Expression


Co-expression Network