LOC113546930 (LOC108275153)


Basic Information

Item Value
gene id LOC113546930
gene name LOC108275153
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22463100 ~ 22490911 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254763
gtctctgttaaactttggagaacagagaagaccccagtacaaacaacacacaccatgttctctacatctctactgcttgtgctggcagctgcttcctatgtgcatggtgtggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGgtttcatattcagttaccAGTGTTGGTACAGCTTGGATCcaacaacctgcaggaaaagctctggagtggattggaTACATCATTTATGATGGGGATACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacaaaatctgcaaactgaagacacagctgtgtattactgcgcag
>XM_034309814.1
atgttctctacatctctactgcttgtgctggcagctgcttcctatgtgcatggtgtggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGGTTTCATATTCAGATATGAGCTATAGTACACATTGGATCcaacaacctgcaggaaaagttCTGGAGTGGATTGGACAGATCAGTAGCAGTGGGGGTACAGcttacagtgacaaactgaaaaacaagttcagtatctccagagacactgctactaacacaataacaattatcccctgcaaggtttcatattcagttaccAGTGTTGGTACAGCTTGGATCcaacaacctgcaggaaaagctctggagtggattggaTACATCATTTATGATGGGGATACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacaaaatctgcaaactgaagacacagctgtgtattactgcgcagGAGcgtcacaAGGATCTGGAGTTAGTTTTGGAGACCACAACATGCACTGGATCAGACGACAGGCGAACAAACCACTGGTGTGGATGGGACGTGTTTGGTATAATGCAAATGGTCATGACTATGCAAAATCTTTTGAAGGGAGAACAGAAATCACCAGAGATAATTCCAACAGCATGGTGTATCTGAAACTCTCTGacagatataaatacaCTGCAAGTACACAGCAGTCTCTGTGTTTGGTCGAGTACAGCAGAGGAATCATGAGCTggcctcttcttcttctgatatCCTCTGTGTCCTATGTGCATGGCATCAGTCTGACCTCGTCTCCTGCTGAGGTTAAACCTCCCGGAGCCTCAGTGAAGTTGTCCTGTCAGATTTCTGGCTATGCCCTCACTAGCTACGGCACGGGCTGGATCAGGCAGCCTCCAGGAAAAGGCTTGGAGTGGATCGGGATCGTATGGGGTGGTGGAAGCATAGACTCTGGAGCTTCCTTTAAAACTCgcttcagcatctccagagacacaAGCAACAATGTGCTTTACTTAGATATCAGCAGCCTGGTGCCAGAAGACACGGCTGTTTATTATTGTGCAAAGACAGGGgagGACGACGCTTTTGACTACTGGGGAAAGGGAACGACGGTCACCGTTACTTCTgCAGTGCAAGGCCCCCCGCAGTCCCTGTTTCCCGTGTGGCAGTTCGGCTCGGCCTCGGACGGTTTAATCACTCTTGGCTGCGTCACGCGCGATTTGGCCTCCGCCGACGGACTGATCTTCAAATGGGCGGATGAGAAAGGAAGCGCGCTGACTGACGTCGTGCAATACCCGGCGGTGCGCCAGGTGAGCCAGGTGCGCGTCAAGGCTTCCGACTGGACCCAGAGCAAGAAGTTCACGTGCCGAGTCGAGAATGCCAAAGGATACAAAGAAGCGCTCTTGCAAAAGAAAGGTATGCGACAAAAACCTGGAACACCCTTTTATGTGTCCTTtccaaacatgcaaacagtggCCACTTTAGTAGGTAACTACACCTGCCCCATACACACAGtatcagacaaacaaaaaatggtACTAaactttccttgtcactggggtggtgcCGTCAAGGGTACAGCTTTTTGTACCTTTTAGTCTGTATCTTTTACGAGGAAACGTGAATATAGTGCacgtttaaaaataatttatggtACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254763 False 391 TUCP 0.46 3 22463100 22469583
XM_034309814.1 True 1709 mRNA 0.48 9 22463154 22490911

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 794218 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 797356 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 799560 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 802061 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 803993 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 46591 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 123948 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 242824 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 290455 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 650803 23141714 ~ 23143760 (+)
G215153 NA non-coding upstream 57576 22401950 ~ 22405524 (+)
G215107 NA non-coding upstream 61780 22133202 ~ 22401320 (+)
G215149 NA non-coding upstream 119463 22340221 ~ 22343637 (+)
G215127 NA non-coding upstream 180107 22260891 ~ 22282993 (+)
LOC117598808 NA non-coding upstream 269517 22193074 ~ 22193583 (+)
LOC117598850 NA non-coding downstream 4297 22495208 ~ 22535776 (+)
LOC117595678 NA non-coding downstream 9972 22500883 ~ 22501370 (+)
G215294 NA non-coding downstream 233776 22724687 ~ 22726646 (+)
G215336 NA non-coding downstream 244860 22735771 ~ 22735986 (+)
G215343 NA non-coding downstream 287705 22778616 ~ 22779241 (+)
LOC117598940 NA other upstream 65530 22397112 ~ 22397570 (+)
LOC117598922 LOC108275153 other upstream 72278 22390359 ~ 22390822 (+)
LOC117598883 NA other upstream 74951 22387697 ~ 22388149 (+)
LOC117598944 NA other upstream 80775 22381888 ~ 22382325 (+)
LOC117598924 NA other upstream 83414 22379243 ~ 22379686 (+)
higd2a higd2a other downstream 274903 22765814 ~ 22769636 (+)
trnat-cgu_7 NA other downstream 289375 22780286 ~ 22780576 (+)
G215347 NA other downstream 344753 22835664 ~ 22835902 (+)
G215621 LOC108277208 other downstream 646335 23137246 ~ 23170553 (+)
LOC113546919 LOC108278588 other downstream 1240543 23731454 ~ 23741390 (+)

Expression


Co-expression Network